View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_16 (Length: 352)
Name: NF7566_high_16
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_16 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 24566672 - 24567013
Alignment:
| Q |
11 |
agaatatagcactagtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgtt |
110 |
Q |
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| T |
24566672 |
agaaaatagcactagtaatatcttgccaggtactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgtt |
24566771 |
T |
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| Q |
111 |
gatcatgacactcaactaagttttgttggtattggtggtcctgcgaataatcctggaatagaatcaaccagtggaaannnnnnnnnagtgaaacatgtac |
210 |
Q |
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| T |
24566772 |
gatcatgacactcaactaagttttgtcggtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaac |
24566871 |
T |
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| Q |
211 |
atggatctggtaatgcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaacc |
310 |
Q |
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| T |
24566872 |
atggatctggtcatgcttataggattggattttgtttggatacaactggagattgtggttttattgcattggaatttttcaattccgaagatggtggacc |
24566971 |
T |
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| Q |
311 |
acgtttgatttttcctgtgaatgatgcgtattctgttgtttt |
352 |
Q |
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| T |
24566972 |
acgtttgatttttactgtgaatgatgcttattctgttgtttt |
24567013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 24554976 - 24555274
Alignment:
| Q |
18 |
agcactagtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatg |
117 |
Q |
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| T |
24554976 |
agcactagtaacatcgttaccggtaccgatcttgagatcgagttcattaacaagccagattgtgctgaatcttccaaatggttgatggttgttgatcatg |
24555075 |
T |
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| Q |
118 |
acactcaactaagttttgttggtattggtggtcctgcgaataatcctggaatagaatcaaccagtggaaannnnnnnnnagtgaaacatgtacatggatc |
217 |
Q |
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| T |
24555076 |
tcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaa------acatggatc |
24555169 |
T |
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| Q |
218 |
tggtaatgcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaaccacgtttg |
317 |
Q |
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| T |
24555170 |
tggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttg |
24555269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 322
Target Start/End: Original strand, 2917004 - 2917295
Alignment:
| Q |
25 |
gtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatgacactca |
124 |
Q |
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| T |
2917004 |
gtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgatcataatactca |
2917103 |
T |
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| Q |
125 |
actaagttttgttggtattggtggtcctgcgaataatcctggaatagaatcaaccagtggaaannnnnnnnnagtgaaacatgtacatggatctggtaat |
224 |
Q |
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| T |
2917104 |
actaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaa------acatggatctggtcat |
2917197 |
T |
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| Q |
225 |
gcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaaccacgtttgatttt |
322 |
Q |
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| T |
2917198 |
gtttataggcttggattttgtttggatgtaactggtgattgtggttatattggacttcaaatgttcaattctgaagaaggtggatcacgtttgttttt |
2917295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 2930585 - 2930716
Alignment:
| Q |
18 |
agcactagtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatg |
117 |
Q |
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|||||| |||||||||| | ||||| ||||||||||| |||||||||| || ||||||| |||||| | || ||||||| ||| |||||||||||| |
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| T |
2930585 |
agcactggtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaatggttgatgtttgttgatcata |
2930684 |
T |
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| Q |
118 |
acactcaactaagttttgttggtattggtggt |
149 |
Q |
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| T |
2930685 |
atactcaactaagttgtgttggtattggtggt |
2930716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 2930770 - 2930883
Alignment:
| Q |
209 |
acatggatctggtaatgcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaa |
308 |
Q |
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| T |
2930770 |
acatggatctggtcatgtttataggcttggattttgtttggatgtaactggaaattgtggctatattggacttcaaatgttcaattctgaagaaggtgga |
2930869 |
T |
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| Q |
309 |
ccacgtttgatttt |
322 |
Q |
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|||||||| |||| |
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| T |
2930870 |
tcacgtttgttttt |
2930883 |
T |
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