View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_17 (Length: 347)
Name: NF7566_high_17
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 5274271 - 5274599
Alignment:
| Q |
13 |
aatattcttataagtatttttaaaaccgacatagcaaccgtggagaacggtctttgtctctttgtggtgtatgttgtactaacaagttcattaacctttg |
112 |
Q |
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| T |
5274271 |
aatattcttataagtatttttaaaaccgacatagcaaccgtggagaacggtctttgtctctttgtggtgtatgttgtactaacaagttcattaacctttg |
5274370 |
T |
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| Q |
113 |
cttcaactcct---------acattaactacctatacaataaggatagagataagcttttaggataaatcaataatgtacaatccatgatcaatgattct |
203 |
Q |
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| T |
5274371 |
cttcaactcctacattaacaacattaactacctatacaataaggatagagataagcttttaggataaatcaataatgtacaatccatgatcaatgattct |
5274470 |
T |
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| Q |
204 |
tataccttg-nnnnnnnatacaaatgtctttaaaattagttgtaattttttaaccatgcatgttatcttggaagtatcatgccacttatgtacactttat |
302 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5274471 |
tataccttgttttttttatacaaatgtctttaaaattagttgtaattttttaaccatgcatgttatcttggaagtatcatgccacttatgtacactttat |
5274570 |
T |
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| Q |
303 |
atacggataaagagattgtattaatttgt |
331 |
Q |
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| T |
5274571 |
atacggataaagagattgtattaatttgt |
5274599 |
T |
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