View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7566_high_18 (Length: 345)
Name: NF7566_high_18
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 52289742 - 52290060
Alignment:
| Q |
17 |
gaaagctcgcacaattactccatgataatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcggacatttccatctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52289742 |
gaaagctcgcacaattactccatgataatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcagacatttccatctct |
52289841 |
T |
|
| Q |
117 |
tctatcatctctaacattgatttcttgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
52289842 |
tctatcatctctaacattgatttcttgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacttg |
52289941 |
T |
|
| Q |
217 |
acataaccttcgtttcggttcctcttcgattctcttccattctacttgacataaccttcgtttcttttcctctttgattctctgtaatactttgaaacct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52289942 |
acataaccttcgtttcggttcctcttcgattctcttccattctacttgacataaccttcgtttcttttcctctttgattctctgtaatactttgaaacct |
52290041 |
T |
|
| Q |
317 |
cactctctcaaccttcttt |
335 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
52290042 |
cactctctcaaccttcttt |
52290060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University