View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_2 (Length: 696)
Name: NF7566_high_2
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_2 |
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| [»] scaffold0596 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 290 - 635
Target Start/End: Original strand, 7471702 - 7472053
Alignment:
| Q |
290 |
gggggagtattaggaaagccaagtatattccatgattcatgccgtaaatatggtaacaatcgtgtaagaatagtttgattgtaggaatagattgttgagt |
389 |
Q |
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| T |
7471702 |
ggggaagtataaggaaagccaagtatattccatgattcatgccgtaaatatggtaacaatcgtataagaatagtttgattgtaggaatagattgttgagt |
7471801 |
T |
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| Q |
390 |
tatatgagcataaccataaaattagagatatgtatttgtatatacattgcctctgtttttcttaatgaaatcac------attgcctctattcttctc-t |
482 |
Q |
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| T |
7471802 |
tataggagcataaccataaaattagagatatgtatttgtatatacattgcctctatttttcttaatgaaatcacaacaaaatcatttcca-tcttctctt |
7471900 |
T |
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| Q |
483 |
tttcattttatgttacatttgtataaaatttggaagtattgggatttcgagcggctctatccatgtatttgcattcacttctcgtgttaaaaagaacacg |
582 |
Q |
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| T |
7471901 |
tttcattttatgttacatttttataaaaattggaagtattggaatttcgagcggctctatccatgtatttgcattcacttctcgtgttaaaaagaacacg |
7472000 |
T |
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| Q |
583 |
nnnnnnnaaaagtgtttcattcatccccgtctcttacatggtgtttcacacat |
635 |
Q |
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| T |
7472001 |
tttttttaaaagtgtttcattcgtccccgtctcttacatggtgtttcacacat |
7472053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 9672 - 9913
Alignment:
| Q |
18 |
atatagagctatgtcagacgcatgttgtgagttatcttgattatgcttattgt--aacgatttggaaatattgcactcaaaggcaacattgatgtattat |
115 |
Q |
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| T |
9672 |
atatagagctatgacaggcgcatgttgtgagttgtcttggctacgttcattgttgaaggatttggagatattgcactcaaaggaagaactgttgtattgt |
9771 |
T |
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| Q |
116 |
aacaacctaaaatctcttcgtattgtgtctaatccagtattttatgaaagaacacgtcatataaagataaattgtcattttatttatgacaaagtttaag |
215 |
Q |
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| T |
9772 |
gacaacaaagcagctcttcacattgcgtccaatccggtatttcatgaaagaactcgacatatagagattgattgtcattttattcgtgataaaattcaag |
9871 |
T |
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| Q |
216 |
atggttcagttgcaaatgagtatattccttcagcaaaacaag |
257 |
Q |
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| T |
9872 |
atggttcaattgcaactgagtatgttccttcagcagaacaag |
9913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 5599 - 5682
Alignment:
| Q |
356 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtatttgtatatacattgc |
439 |
Q |
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| T |
5599 |
agaatagcttgattgtaggaatatattgctgagttataacagcataatcatcacattagagatatgtatctgtgtatatattgc |
5682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 47752651 - 47752892
Alignment:
| Q |
18 |
atatagagctatgtcagacgcatgttgtgagttatcttgattatgcttattgt--aacgatttggaaatattgcactcaaaggcaacattgatgtattat |
115 |
Q |
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| T |
47752651 |
atatagagctatgacaggcgcatgttgtgagttgtcttggctacgttcattgttgaaggatttggagatattgcactcaaaggaagaactgttgtattgt |
47752750 |
T |
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| Q |
116 |
aacaacctaaaatctcttcgtattgtgtctaatccagtattttatgaaagaacacgtcatataaagataaattgtcattttatttatgacaaagtttaag |
215 |
Q |
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| T |
47752751 |
gacaacaaagcagctcttcacattgcgtccaatccggtatttcatgaaagaactcgacatatagagattgattgtcattttattcgtgataaaattcaag |
47752850 |
T |
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| Q |
216 |
atggttcagttgcaaatgagtatattccttcagcaaaacaag |
257 |
Q |
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| T |
47752851 |
atggttcaattgcaactgagtatgttccttcagcagaacaag |
47752892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 47753095 - 47753178
Alignment:
| Q |
356 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtatttgtatatacattgc |
439 |
Q |
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| T |
47753095 |
agaatagcttgattgtaggaatatattgctgagttataacagcataatcaacacattagagatatgtatatgtgtatatattgc |
47753178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 19665915 - 19665838
Alignment:
| Q |
356 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtatttgtatata |
433 |
Q |
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| T |
19665915 |
agaatagcttgattataggaatagattgatgagctatagaagcataatcatcaaattagagatatgtatttgtgtata |
19665838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 19666359 - 19666118
Alignment:
| Q |
18 |
atatagagctatgtcagacgcatgttgtgagttatcttgattatgcttattgt--aacgatttggaaatattgcactcaaaggcaacattgatgtatt-- |
113 |
Q |
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| T |
19666359 |
atatagagctatgacagacgcatgttgtgagttgtcttggctacgtccattgttgaaggatttggagatattgcacccaaaggaagcacggttgtattgc |
19666260 |
T |
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| Q |
114 |
-ataacaacctaaaatctcttcgtattgtgtctaatccagtattttatgaaagaacacgtcatataaagataaattgtcattttatttatgacaaagttt |
212 |
Q |
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| T |
19666259 |
gataacaaaccaa---ctcttcatattgcatctaatccgatatttcatgaaagaactcgacataccgagatagattgtcattttattcgtgacaaaattc |
19666163 |
T |
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| Q |
213 |
aagatggttcagttgcaaatgagtatattccttcagcaaaacaag |
257 |
Q |
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| T |
19666162 |
aagatggtttatttgcaactgagtatgttccataagcataacaag |
19666118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 19666062 - 19665988
Alignment:
| Q |
254 |
caagctgggagttcttgatatccactcactaacttg-gggggagtattaggaaagccaagtatattccatgattc |
327 |
Q |
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| T |
19666062 |
caagttgggagttcttaatatccactctctaacttgacggggagtgttaggaaagtcaattatattctatgattc |
19665988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 39037237 - 39037169
Alignment:
| Q |
356 |
agaatagtttgattgtaggaatagattgttgagttatatgagcataaccataaaattagagatatgtat |
424 |
Q |
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| T |
39037237 |
agaatagcttgattgtaggaatatattgctgagttataacagcataatcaacacattagagatatgtat |
39037169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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