View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_26 (Length: 245)
Name: NF7566_high_26
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_26 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 20384032 - 20383958
Alignment:
| Q |
171 |
tttttagcaagacatcaaggggaaacaatgacatctcagctaagttggcatctcgaagaacccctatcctatgcc |
245 |
Q |
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| T |
20384032 |
tttttagcaagacatcaaggggaagcaacgatatctcaactaagttggcatctcgaagaacccccatcctatgcc |
20383958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 20384114 - 20384085
Alignment:
| Q |
92 |
ggaagtgcaacaaggagaagctcaaatagt |
121 |
Q |
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| T |
20384114 |
ggaagtgcaacaaggagaagctcaaatagt |
20384085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 22602035 - 22602100
Alignment:
| Q |
180 |
agacatcaaggggaaacaatgacatctcagctaagttggcatctcgaagaacccctatcctatgcc |
245 |
Q |
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| T |
22602035 |
agacatcaaggggaatcaacgacatcccaactaggttggcaccccgcagaacccccatcctatgcc |
22602100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 31556714 - 31556666
Alignment:
| Q |
183 |
catcaaggggaaacaatgacatctcagctaagttggcatctcgaagaac |
231 |
Q |
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| T |
31556714 |
catcaaggagaaacaatgacatcccaactaagttggcatcccgatgaac |
31556666 |
T |
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