View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_27 (Length: 245)
Name: NF7566_high_27
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25564916 - 25564674
Alignment:
| Q |
1 |
ctttatttgctattttcacatagtagttcattcaatgaaagagagcattcttatnnnnnnnnnnnnnnnntcatagaaacagcattacattgattcaata |
100 |
Q |
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| T |
25564916 |
ctttatttgctatttgcacatagtagttcattcaatgaaagagagcattcttataaaaaataaaataaaatcatagaaacagcattacattgattcaata |
25564817 |
T |
|
| Q |
101 |
agttttgaaataagaattgctttgacgtcatggaacacttttagttgcatcattcagctgtattattaaagttttctactccttactttgaagttcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25564816 |
agttttgaaataagaattgctttgacgtcatggaacacttttagttgcatcattcagctgtattattaaagttttctactccttactttgaagttcttgt |
25564717 |
T |
|
| Q |
201 |
tctgctcacataactgacttagttcctcatgtatttcctttat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25564716 |
tctgctcacataactgacttagttcctcatgtatttcctttat |
25564674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25332803 - 25332752
Alignment:
| Q |
1 |
ctttatttgctattttcacatagtagttcattcaatgaaagagagcattctt |
52 |
Q |
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||||||||| | ||| | |||||||||||||||||||||||||| ||||||| |
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| T |
25332803 |
ctttatttgttgtttgctcatagtagttcattcaatgaaagagaacattctt |
25332752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 25332741 - 25332691
Alignment:
| Q |
71 |
tcatagaaacagcattacattgattcaataagttttgaaataagaattgct |
121 |
Q |
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||||||||||| ||||| ||||||||||||| |||| ||| |||||||||| |
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| T |
25332741 |
tcatagaaacaacattatattgattcaataaatttttaaaaaagaattgct |
25332691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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