View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_28 (Length: 244)
Name: NF7566_high_28
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 11134380 - 11134164
Alignment:
| Q |
19 |
actaataccagaagcaacccaaagacgttgattataatcatcaaccatatcatcaggaacaaaacctgttctacaaagtggacatgttttctgatcaaga |
118 |
Q |
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| T |
11134380 |
actaataccagaagcaacccaaagacgttgattataatcatcaaccatatcatcaggaacaaaacctgttctacaaagtggacatgttttctgatcaaga |
11134281 |
T |
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| Q |
119 |
tcaatccaacggtccacacagtttcgatgaaaaatatgtcgacagttcttcaaacatcgtatctcttcttcctcggagaattcaaacaaacaaacagcac |
218 |
Q |
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| T |
11134280 |
tcaatccaacggtccacacagtttcgatgaaaaatatgtcgacagttcttcaaacatcgtatctcttcttcctcggagaattcaaacaaacaaacagcac |
11134181 |
T |
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| Q |
219 |
agcaacaaccttcttct |
235 |
Q |
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||||||||||||||||| |
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| T |
11134180 |
agcaacaaccttcttct |
11134164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 29548363 - 29548463
Alignment:
| Q |
89 |
ctacaaagtggacatgttttctgatcaagatcaatccaacggtccacacagtttcgatgaaaaatatgtcgacagttcttcaaacatcgtatctcttctt |
188 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||| ||||||| || ||||| |||||||||| |
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| T |
29548363 |
ctacaaagtggacatgttttctgatcatgatcaatccaacggtccacacacgtccgatgaaacatatgtctacagttcgccatacatctgatctcttctt |
29548462 |
T |
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| Q |
189 |
c |
189 |
Q |
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| T |
29548463 |
c |
29548463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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