View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_high_4 (Length: 539)
Name: NF7566_high_4
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 521
Target Start/End: Original strand, 9226875 - 9227389
Alignment:
| Q |
7 |
tcgaagaatatcattcctaatataaagaggaaaaagataagagtttgatcaatattagcaatgataagatcaagaatttgtgagctgaattgaatgggaa |
106 |
Q |
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| T |
9226875 |
tcgaaaaaaatcattcctaatataaagaggaaaaagataagagtttgatcaatattagcaatgataagatcaagaatttatgagctgaattgaatgggaa |
9226974 |
T |
|
| Q |
107 |
tgcaagagagtaatatctcaatgaaagttaagttaatgttgcaatgtaacatgcttacaaaccaagtccttaaattcacaacaaaaggacaagtaagaaa |
206 |
Q |
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| T |
9226975 |
tgcaagagagtaatatctcaatgaaagttaagttaatgttgcaatgtaacatgcttacaaaccaagtccttaaattcacaacaaaaggacaagtaagaaa |
9227074 |
T |
|
| Q |
207 |
caaatgatgcgaagattccaaattgaagaacacaaactgagaccacaatgcattcctttaactgtaagttatcatctgtaggaattttgcattgcacgag |
306 |
Q |
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| T |
9227075 |
caaatgatgcgaagattccaaattaaagaacacaaactgagaccacaatgcattcctttaactgtaagttatcatctgtaggaattttgcgttgcacgag |
9227174 |
T |
|
| Q |
307 |
tcgccaaaagataaacgaatgatatggaggaatacaagatcgcgtagggtgcaaccaaattgaaaagcttgtttggaggataaattaccgtcgaaagtgt |
406 |
Q |
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| T |
9227175 |
ccgccaaaagataaaagaatgatatggaggaatacaagaccgcgtagggtgcaaccaaattgaaaagcttgtttggaggataaattaccgtcgaaagtgt |
9227274 |
T |
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| Q |
407 |
gcaaccaaactagcttatctggaaggggagaaatcgagagaatgatcttcaaaatgctcgaaacaatattaggattcctcatgaccattaatggaatgtt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
9227275 |
gcaaccaaactagcttatctggaaggggagaaatcgagagaatgatcttcaaaatgcttgaaacaatattaggattcctcatgaccattaagggaatgtt |
9227374 |
T |
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| Q |
507 |
ccattgacccggtac |
521 |
Q |
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| T |
9227375 |
ccattgacccggtac |
9227389 |
T |
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