View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7566_high_9 (Length: 457)

Name: NF7566_high_9
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7566_high_9
NF7566_high_9
[»] chr3 (4 HSPs)
chr3 (13-438)||(51199964-51200389)
chr3 (65-115)||(52708625-52708675)
chr3 (65-113)||(22508738-22508786)
chr3 (65-117)||(45267304-45267356)
[»] chr4 (1 HSPs)
chr4 (65-115)||(19674415-19674465)
[»] chr6 (1 HSPs)
chr6 (65-126)||(21165236-21165297)
[»] chr1 (6 HSPs)
chr1 (66-115)||(48334141-48334190)
chr1 (65-115)||(9774896-9774946)
chr1 (69-115)||(24427381-24427427)
chr1 (65-115)||(37396848-37396898)
chr1 (65-115)||(50164404-50164454)
chr1 (65-125)||(27264224-27264284)
[»] chr8 (5 HSPs)
chr8 (65-121)||(10718456-10718512)
chr8 (65-115)||(10717122-10717172)
chr8 (65-115)||(36588223-36588273)
chr8 (65-115)||(39440430-39440480)
chr8 (65-114)||(3483635-3483684)
[»] chr7 (3 HSPs)
chr7 (66-125)||(39619800-39619859)
chr7 (66-115)||(24197112-24197161)
chr7 (65-113)||(11217079-11217127)
[»] scaffold0517 (1 HSPs)
scaffold0517 (65-115)||(10316-10366)
[»] scaffold0095 (1 HSPs)
scaffold0095 (65-115)||(42763-42813)
[»] scaffold0001 (1 HSPs)
scaffold0001 (65-115)||(119594-119644)
[»] chr2 (1 HSPs)
chr2 (65-115)||(1777470-1777520)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 51199964 - 51200389
Alignment:
Q  13 aatatgcattggaggaaaatgctagagggcttnnnnnnntagacattacaacgaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttt 112  Q
    ||||||||||||| ||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  51199964 aatatgcattggaagaaaatgctagagggcttaaaaaaatagacattacagcgaccaaaactcgaactcgctatatttgtatggaccaaatgcatattta 51200063  T
Q  113 agcttatatataaaaagatagtttatatgattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaattgaaataaacgatggaggtc 212  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  51200064 agcttatatataaaaagatagtttatataattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaatcgaaataaacgatcgaggtc 51200163  T
Q  213 gttttattgtgagaaatagagtttaaaatataaactttccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccat 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51200164 gttttattgtgagaaatagagtttaaaatataaactgtccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccat 51200263  T
Q  313 ctaagttgacctgctaaaaatccatgtattattcgtttgtgttgttttctctgttttatcaacaatattgtatatataatgacaaaaattgcataagaaa 412  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51200264 ctaagttgacctgttaaaaatccatgtattattcgtttgtgttgttttctctgttttatcaacaatattgtatatataatgacaaaaattgcataagaaa 51200363  T
Q  413 tgtaaagtttcttctttggtgtcctt 438  Q
    ||||||||||||||||||||||||||    
T  51200364 tgtaaagtttcttctttggtgtcctt 51200389  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 52708625 - 52708675
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  52708625 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 52708675  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 22508786 - 22508738
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 113  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||    
T  22508786 gaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 45267356 - 45267304
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagctt 117  Q
    ||||||||||| ||||||||||||||| | ||| ||||  |||||||||||||    
T  45267356 gaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagctt 45267304  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 19674465 - 19674415
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  19674465 gaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagc 19674415  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 21165297 - 21165236
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaa 126  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||  |||||||||    
T  21165297 gaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagccaatatataaa 21165236  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 48334141 - 48334190
Alignment:
Q  66 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    |||||||||| || |||||||||||||| |||||||| ||||||||||||    
T  48334141 accaaaactcaaattcgctatatttgtagggaccaaaagcatattttagc 48334190  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 9774896 - 9774946
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  9774896 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 9774946  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 24427381 - 24427427
Alignment:
Q  69 aaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24427381 aaaactcaaactcgctatatttgtagggaccaaaaacatattttagc 24427427  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 37396848 - 37396898
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  37396848 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 37396898  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 50164454 - 50164404
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  50164454 gaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagc 50164404  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 27264224 - 27264284
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 125  Q
    ||||||||| | ||||||||||||||| | ||||||||  ||||||||||| |||| ||||    
T  27264224 gaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctataaataa 27264284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 10718456 - 10718512
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatat 121  Q
    ||||||||| | ||||||||||||||| | |||||||| |||||||||||| |||||    
T  10718456 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctatat 10718512  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 10717172 - 10717122
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  10717172 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 10717122  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 36588273 - 36588223
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  36588273 gaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagc 36588223  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 39440430 - 39440480
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  39440430 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 3483684 - 3483635
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttag 114  Q
    ||||||||||| ||||||||||||||| | ||||||||  ||||||||||    
T  3483684 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 39619800 - 39619859
Alignment:
Q  66 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 125  Q
    |||||||| | ||||||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcctatttataa 39619859  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 24197112 - 24197161
Alignment:
Q  66 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    |||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  24197112 accaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 24197161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 11217079 - 11217127
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 113  Q
    |||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  11217079 gaccaaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

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Target: scaffold0517 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 10366 - 10316
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  10366 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 10316  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 42763 - 42813
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  42763 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 119644 - 119594
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  119644 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 119594  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 1777520 - 1777470
Alignment:
Q  65 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 115  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||||    
T  1777520 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagc 1777470  T

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