View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_13 (Length: 422)
Name: NF7566_low_13
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 17945752 - 17946151
Alignment:
| Q |
18 |
aattgatattcgagttcgaaaagattgacttgctttaccagtccatacaagaatcccaaaatgatcgtttggtttcgccatttcttcttcagttggtttg |
117 |
Q |
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| T |
17945752 |
aattgatatatgagttcgaaaagattgacttgctttaccagtccatacaagaatcccaaaatgatcgtttggttttgccatttcttcttcagttggtttg |
17945851 |
T |
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| Q |
118 |
tcagttaatatgtgagttccaaaaggttgttttggttttgcactttctttttgttcccaccatatgttaattccaaaaggttgtcttgcttttgcacttg |
217 |
Q |
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| T |
17945852 |
tcaattaatatgtgagttccaaaaggttgttttggttttacactttctttttgttcccaccatatgttaattccaaaaggttgtcttgcttttgcacttg |
17945951 |
T |
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| Q |
218 |
ttttctcgagccatttgcgagttccaaaaaattgatttgcttttttgacctgtaaatgtccctttgattgtgatggttgaacatccgaatgtttatggac |
317 |
Q |
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| T |
17945952 |
ttttctcgagccatttgcgagttccaaaaaattgatttgcttttttgacctgtaaatgtccctttgattgtgatggttgaacatccgaatgtttatggac |
17946051 |
T |
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| Q |
318 |
acccaagctcannnnnnngccaggatagaggtcatgttcaaaaaatacagtccaatattgcttctcgtcttggcctttaataggcacacaggttctgctc |
417 |
Q |
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| T |
17946052 |
acccaagctcatttttttgccaggatagaggtcatgttcaaaaaatacagtccaatattgcttctcgtcttggcctttaatgggcacactggttccgctc |
17946151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 406
Target Start/End: Original strand, 17957432 - 17957612
Alignment:
| Q |
226 |
agccatttgcgagttccaaaaaattgatttgcttttttgacctgtaaatgtccctttgattgtgatggttgaacatccgaatgtttatggacacccaagc |
325 |
Q |
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| T |
17957432 |
agccatttgcgagtaccaaatgattgacttgcttttttgactgatacttgtgtatgtgattgtgacggttgaatatctgaatgtttttgaatgcccaaac |
17957531 |
T |
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| Q |
326 |
tcannnnnnngccaggatagaggtcatgttcaaaaaatacagtccaatattgcttctcgtcttggcctttaataggcacac |
406 |
Q |
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| T |
17957532 |
tcattttttttccaggatataggtcatgttcaaaaaagacggtccaatattgcttctcttctttaccttggataggcacac |
17957612 |
T |
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