View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_15 (Length: 355)
Name: NF7566_low_15
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 6222597 - 6222273
Alignment:
| Q |
16 |
atagagtaacacaccaaaccaaaccaaaaatctcgtagtaacaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggcaccttcgccaccg |
115 |
Q |
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| T |
6222597 |
atagagtaacacaccaaaccaaaccaaaaatctcgtagtatcaaaaacatgaagaactgggttcgaggtaagatgctaggtagtggcaccttcgccaccg |
6222498 |
T |
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| Q |
116 |
tcaacttagccacacacccacagaattccggtatctttccgtctctcaccgccgtcaaaacctctgatacttacggctcccattctctcataaacgagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6222497 |
tcaacttagccacacacccacagaattccggtatctttccgtctctcaccgcagtcaaaacctctgatacttacggctcccattttctcataaacgagaa |
6222398 |
T |
|
| Q |
216 |
acaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataatatttttcta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222397 |
acaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataatatttttcta |
6222298 |
T |
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| Q |
316 |
gaatatgctgctggcggtactctct |
340 |
Q |
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||||||||||||||||||||||||| |
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| T |
6222297 |
gaatatgctgctggcggtactctct |
6222273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 6233182 - 6233069
Alignment:
| Q |
207 |
aaacgagaaacaaatacttgaaagtttaggatcatccccacatattattaagtattttggtcatgatcaaactttcgaaaatggtgaagagtgttataat |
306 |
Q |
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|||||||||||||||||| || |||||||||||||||||||| |||| |||| |||||| || || ||||| | ||||| | |||||||| ||| ||| |
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| T |
6233182 |
aaacgagaaacaaatactcgatcgtttaggatcatccccacatgttatcaagtgttttggccaagacaaaactgttgaaaacgatgaagagtattacaat |
6233083 |
T |
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| Q |
307 |
atttttctagaata |
320 |
Q |
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|||||||||||||| |
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| T |
6233082 |
atttttctagaata |
6233069 |
T |
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