View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7566_low_16 (Length: 352)
Name: NF7566_low_16
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_16 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 24566672 - 24567013
Alignment:
| Q |
11 |
agaatatagcactagtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgtt |
110 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
24566672 |
agaaaatagcactagtaatatcttgccaggtactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgtt |
24566771 |
T |
|
| Q |
111 |
gatcatgacactcaactaagttttgttggtattggtggtcctgcgaataatcctggaatagaatcaaccagtggaaannnnnnnnnagtgaaacatgtac |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||| ||||||||||||| |||||||||| || |
|
|
| T |
24566772 |
gatcatgacactcaactaagttttgtcggtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaac |
24566871 |
T |
|
| Q |
211 |
atggatctggtaatgcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaacc |
310 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||| |||| ||| |
|
|
| T |
24566872 |
atggatctggtcatgcttataggattggattttgtttggatacaactggagattgtggttttattgcattggaatttttcaattccgaagatggtggacc |
24566971 |
T |
|
| Q |
311 |
acgtttgatttttcctgtgaatgatgcgtattctgttgtttt |
352 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
24566972 |
acgtttgatttttactgtgaatgatgcttattctgttgtttt |
24567013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 24554976 - 24555274
Alignment:
| Q |
18 |
agcactagtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatg |
117 |
Q |
| |
|
||||||||||| ||| | | ||||| ||||||||||| ||||||| || || || ||||| |||||||| || ||||||| ||| |||||||||||| |
|
|
| T |
24554976 |
agcactagtaacatcgttaccggtaccgatcttgagatcgagttcattaacaagccagattgtgctgaatcttccaaatggttgatggttgttgatcatg |
24555075 |
T |
|
| Q |
118 |
acactcaactaagttttgttggtattggtggtcctgcgaataatcctggaatagaatcaaccagtggaaannnnnnnnnagtgaaacatgtacatggatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||| |||||| || |||||||| |||| ||||||||| |
|
|
| T |
24555076 |
tcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaa------acatggatc |
24555169 |
T |
|
| Q |
218 |
tggtaatgcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaaccacgtttg |
317 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| || ||||||| || | ||||||| | || |||||||| ||||||| | |||||||| |
|
|
| T |
24555170 |
tggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttg |
24555269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 322
Target Start/End: Original strand, 2917004 - 2917295
Alignment:
| Q |
25 |
gtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatgacactca |
124 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| |||| ||| |||||||| |||||||| || ||||||| ||| ||| |||||||| | ||||| |
|
|
| T |
2917004 |
gtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgatcataatactca |
2917103 |
T |
|
| Q |
125 |
actaagttttgttggtattggtggtcctgcgaataatcctggaatagaatcaaccagtggaaannnnnnnnnagtgaaacatgtacatggatctggtaat |
224 |
Q |
| |
|
|||||||| |||||||||||||||| | | || ||| ||| |||||| ||| ||||| || |||||| ||||||||||||| || |
|
|
| T |
2917104 |
actaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaa------acatggatctggtcat |
2917197 |
T |
|
| Q |
225 |
gcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaaccacgtttgatttt |
322 |
Q |
| |
|
| ||||||| ||| ||||||||||||| |||||| |||||||||| ||||||| | | | |||||||||| |||||||| | |||||||| |||| |
|
|
| T |
2917198 |
gtttataggcttggattttgtttggatgtaactggtgattgtggttatattggacttcaaatgttcaattctgaagaaggtggatcacgtttgttttt |
2917295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 2930585 - 2930716
Alignment:
| Q |
18 |
agcactagtaatatcttatcaggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatg |
117 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||| |||||||||| || ||||||| |||||| | || ||||||| ||| |||||||||||| |
|
|
| T |
2930585 |
agcactggtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaatggttgatgtttgttgatcata |
2930684 |
T |
|
| Q |
118 |
acactcaactaagttttgttggtattggtggt |
149 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| |
|
|
| T |
2930685 |
atactcaactaagttgtgttggtattggtggt |
2930716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 2930770 - 2930883
Alignment:
| Q |
209 |
acatggatctggtaatgcttataggattgtattttgtttggatacaactggagattgtggttttattggattggactttttcaattctggagaaggtgaa |
308 |
Q |
| |
|
||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||| ||||||| | ||||||| | | | |||||||||| |||||||| | |
|
|
| T |
2930770 |
acatggatctggtcatgtttataggcttggattttgtttggatgtaactggaaattgtggctatattggacttcaaatgttcaattctgaagaaggtgga |
2930869 |
T |
|
| Q |
309 |
ccacgtttgatttt |
322 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
2930870 |
tcacgtttgttttt |
2930883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University