View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_19 (Length: 342)
Name: NF7566_low_19
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 18646170 - 18645856
Alignment:
| Q |
11 |
gtgttgtatccggtagcaaaaagtatgattgagattcataatttgagtgtgttaaaaatatcattgtcattcatgtataatgcatgtaaagaaattaggt |
110 |
Q |
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| T |
18646170 |
gtgttgtatccggtagcaaaaagtatgattgagattcataatttgagtgtgttaaaaatatcattgtgattcatgtataatgcatgtaaagaaattaggt |
18646071 |
T |
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| Q |
111 |
tcttatttctgaacacactatgtcatttgttgttgaagtatattatacagaagaaaaattacatgctcaaagcttaagcagttattgaagtttcttgaac |
210 |
Q |
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| T |
18646070 |
tcttatttctgaacacactatgtcatttgttgttgaagtatattatacagaagaaaaattacatgctcaaagcttaagcagttattgaagtttcttgaac |
18645971 |
T |
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| Q |
211 |
taagagaataagtgtgtttacccctaattaagaatgatgtgctgtgttacgaaactgaagcatatttcctttgaagatagatcagcctctaatacccttt |
310 |
Q |
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| T |
18645970 |
taagagaataagtgtgtttacccctaattaagaatgatgtgctgtgttacgaaactggagcatatttcctttgaagatagatcagcctctaatacccttt |
18645871 |
T |
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| Q |
311 |
atcttttcttaaagt |
325 |
Q |
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| T |
18645870 |
atcttttcttaaagt |
18645856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 18649129 - 18649038
Alignment:
| Q |
227 |
tttacccctaattaagaatgatgtgctgtgttacgaaactgaagcatatttcctttgaagatagatcagcctctaataccctttatcttttcttaa |
322 |
Q |
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| T |
18649129 |
tttacctctaattaagtatgatatgttgagttaagaaattggagcataatccctttgaagat----cagactctaataccctttatcttttcttaa |
18649038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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