View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_24 (Length: 250)
Name: NF7566_low_24
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48553256 - 48553496
Alignment:
| Q |
1 |
ctttgattgatacggtggtagtaccttacccttcttcttggttttacaacttttctcttttgcaaaagtattcagttaccacttctcgctttcctattta |
100 |
Q |
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| T |
48553256 |
ctttgattgatacggtggtagtaccttacccttcttcttggttttacaacttttctctttcgcaaaagtattcagttaccacttctcgctttcctattta |
48553355 |
T |
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| Q |
101 |
gcaatccatgtaaagttaagaaatacaagttgtttaatctaatttgaatacaaaacattgcagtgcaaacttccaaatattgcagcaattgaatactcag |
200 |
Q |
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| T |
48553356 |
gcaatccatgtaaagttaagaaatacaagttgtttaatctaatttgaatacaaaacattgcagtgcaaacttccaaatattgcagcaattgaatactcag |
48553455 |
T |
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| Q |
201 |
agatacaagttaagcttgctcattcatgttttaatattctt |
241 |
Q |
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| T |
48553456 |
agatacaagttaagcttgctcattcatgttttaataatctt |
48553496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 48584682 - 48584864
Alignment:
| Q |
61 |
tgcaaaagtattcagttaccacttctcgctttcctatttagcaatccatgtaaagttaagaaatacaag---ttgtttaat-ctaatttgaatacaaaac |
156 |
Q |
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| T |
48584682 |
tgcaaaagtattcaattaccacttctcgcttgcctatttagcaatcagtgtaaagttatgaaaaataagcagttgttttatgctaattagaa-acaaaac |
48584780 |
T |
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| Q |
157 |
attgcagtgcaaacttccaaatattgcagcaattgaatactcagagatacaagttaagcttgctc----attcatgttttaata |
236 |
Q |
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| T |
48584781 |
tatgcaattcagacttccaaatatttcagcaattgaatactcagagatacaagttaagcttgttcgttcattcatgttttaata |
48584864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48582710 - 48582772
Alignment:
| Q |
1 |
ctttgattgatacggtggtagtaccttacccttcttcttggttttacaacttttctcttttgc |
63 |
Q |
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| T |
48582710 |
ctttgattgatacggtggtagtaccttacccttcttcttggttttacaacttttctcttttgc |
48582772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 15771306 - 15771155
Alignment:
| Q |
94 |
ctatttagcaatccatgtaaagttaagaaatacaag----ttgtttaatctaatttgaatacaaaacattgcagtgcaaacttccaaatattgcagcaat |
189 |
Q |
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|||||||||| |||||||||||||| |||| ||||| || |||| |||||||||||||||||| ||||| | || |||| || ||| ||||||| |
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| T |
15771306 |
ctatttagcagtccatgtaaagttatgaaaaacaagcagtttctttatactaatttgaatacaaaaccttgcaatacagacttttgaacatttcagcaat |
15771207 |
T |
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| Q |
190 |
tgaatactcagagatacaagttaagcttgctcattcatgttttaatattctt |
241 |
Q |
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| T |
15771206 |
tgaatgctctgagatacaagtaaaacttaatcattcatgttttaataatctt |
15771155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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