View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7566_low_29 (Length: 241)
Name: NF7566_low_29
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_29 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 49686183 - 49686406
Alignment:
| Q |
18 |
acttgtgtagtaattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686183 |
acttgtgtagtaattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaa |
49686282 |
T |
|
| Q |
118 |
cagaataggatggctctagttcatgcactacatcttttgttctctcatttgactgtgttaccgctacttgtcttaactagtaaaggaaatggacacagtg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686283 |
cagaataggatggctctagttcatgcactacatcttttgttctctcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtg |
49686382 |
T |
|
| Q |
218 |
atgattgtccagaatcatttgatt |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49686383 |
atgattgtccagaatcatttgatt |
49686406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 49690449 - 49690663
Alignment:
| Q |
30 |
attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggatg |
129 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||| ||| | ||| |
|
|
| T |
49690449 |
attttccaagtcaacta--gcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaa-aagtgtggaacaaattgtttaacacaattgaatg |
49690545 |
T |
|
| Q |
130 |
gctctagttcatgcactacat---------cttttgttctctcatttgactgtgttaccgctacttgtcttaactagtaaaggaaatggacacagtgatg |
220 |
Q |
| |
|
||| ||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
49690546 |
gctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtcttaactaggaaaggaaatggacacagtggtg |
49690645 |
T |
|
| Q |
221 |
attgtccagaatcatttg |
238 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
49690646 |
attgtccagactcatttg |
49690663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 49678948 - 49679039
Alignment:
| Q |
150 |
tcttttgttctctcatttgactgtgttaccgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgatt |
241 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49678948 |
tcttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgatt |
49679039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University