View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_31 (Length: 237)
Name: NF7566_low_31
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7138237 - 7138455
Alignment:
| Q |
1 |
ggcacaattttttcgcggtcaaataattaaataaaacgtacacataagtatcgagcgtgagttaattgccatttatagcgagtgacaattaacttgcatt |
100 |
Q |
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| T |
7138237 |
ggcacaattttttcgcggtcaaataattaaataaaacgtacacataagtaccgagcttgagttaattgccatttgtagcgagtgacaattaacttgcatt |
7138336 |
T |
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| Q |
101 |
gaggttattaggataaattttgggcgtaaatgagcaattttaaaagcgagaaggttaattttaaataacatatgcaaatataagg-ccaagcccataaca |
199 |
Q |
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| T |
7138337 |
ggggttattaggataaattttaggtgtaaatgagcaattttaaaagtgagaagattaattttaaataacatatgcaaatataaggcccaagcccataaca |
7138436 |
T |
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| Q |
200 |
acaaacacacataacccta |
218 |
Q |
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| T |
7138437 |
acaaacacacataacccta |
7138455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 5090651 - 5090845
Alignment:
| Q |
18 |
gtcaaataattaaataaaacgtacacataagtatcgagcgtgagttaattgccatttatagcgagtgacaattaacttgcattgaggttattaggataaa |
117 |
Q |
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| T |
5090651 |
gtcaaataatcaaataaaacgtaagcataggaaccgagcgcgagttagcttccgtttgtagcgagcgacaattaacttgcatttgggttattagggtaaa |
5090750 |
T |
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| Q |
118 |
ttttgggcgtaaatgagcaattttaaaagcgagaaggttaattttaaataacatatgcaaatat-aaggccaagcccataacaacaaacacacat |
211 |
Q |
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| T |
5090751 |
ttttgggggtaaatgagcaattttaaaagtgagaagggtaatattgaataacatatgcaaatatgaagcccaagcccataacaacaaacaaacat |
5090845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 41880929 - 41881144
Alignment:
| Q |
3 |
cacaattttttcgcggtcaaataattaaataaaacgtacacataagtatcgagcgtgagttaattgccatttatagcgagtgacaattaacttgcattga |
102 |
Q |
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| T |
41880929 |
cacaattttttcgcggtcaaataattaaataaaatatacacataagtaccgagcgtgagttaattgccatttgtagcgagtgataattaacttgcattgg |
41881028 |
T |
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| Q |
103 |
ggttattaggataaattttgggcgtaaatgagcaattttaaaagcgagaaggttaattttaaataacatatgcaaatataaggccaagcccataacaaca |
202 |
Q |
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| T |
41881029 |
ggttattaggataaattttgggtgtaaatgagcaattttaaaagtgagaagattaattttaaataacatgtgcagatataaggccaagcccataacaaca |
41881128 |
T |
|
| Q |
203 |
aacacacataacccta |
218 |
Q |
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| T |
41881129 |
aacacacatagcccta |
41881144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 26443058 - 26442843
Alignment:
| Q |
4 |
acaattttttcgcggtcaaataattaaataaaacgtacacataagtatcgagcgtgagttaattgccatttatagcgagtgacaattaacttgcattgag |
103 |
Q |
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| T |
26443058 |
acaatttttttgcggtcaaataattaaataaaacgtacacataagtaccgagcgtgagttaattgtcatttgtagcgagtgacaattaatttgcattggg |
26442959 |
T |
|
| Q |
104 |
gttattaggataaattttgggcgtaaatgagcaattttaaaagcgagaaggttaattttaaataacatatgcaaatataagg-ccaagcccataacaaca |
202 |
Q |
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| T |
26442958 |
gttattaggataaatttttggtgtaaatgagcaattttaaaagtgagaagattaattttaaataacatatgcaaatataaggcccaagcccacaacaaca |
26442859 |
T |
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| Q |
203 |
aacacacataacccta |
218 |
Q |
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|||||||||||||||| |
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| T |
26442858 |
aacacacataacccta |
26442843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 53223621 - 53223550
Alignment:
| Q |
72 |
tttatagcgagtgacaattaacttgcattgaggttattaggataaattttgggcgtaaatgagcaattttaa |
143 |
Q |
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| T |
53223621 |
tttatagcgagcgacgattaacttgcactagggttattagggtaaatttttggtgtaaatgatcaattttaa |
53223550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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