View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_34 (Length: 217)
Name: NF7566_low_34
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 10771873 - 10771944
Alignment:
| Q |
23 |
aaaactatgtaagcgtggtgcgaatgtttggtctagcatcattttcatattcaacaagcaatctaaaaatgt |
94 |
Q |
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| T |
10771873 |
aaaactatataagcgtgctgcgaatgtttggtctagcatcattttcatattcaataagcaatctaaaaatgt |
10771944 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 10782962 - 10783018
Alignment:
| Q |
49 |
tttggtctagcatcattttcatat-tcaacaagcaatctaaaaatgtcaacttatat |
104 |
Q |
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| T |
10782962 |
tttggtccatcatcattttcatatatctattagcaatctaaaaatgtcaacttatat |
10783018 |
T |
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