View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_6 (Length: 506)
Name: NF7566_low_6
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 47474957 - 47474633
Alignment:
| Q |
12 |
tgttcatagtgtttaccaatttttccatatctcnnnnnnnnnnn--cttcgagattgatatcatatttcattaggatannnnnnn-catttgtatttcat |
108 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| || |
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| T |
47474957 |
tgttcatagtgtttaccaatttttccatatctctttttttttctttcttcaagattgatatcatatttcattaggatattttttttcatttgtatttaat |
47474858 |
T |
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| Q |
109 |
tcctcaattttaaggcaccacctttaactactcaactatttgaactcattcgatactggatgggtgctcattgactaccaggccgctaccagaactactc |
208 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47474857 |
tcctcaattttaaggcaccgcctttaactactcaactatttgaactcattcgatactggataggtgctcattgactaccaggccgctaccagaactactc |
47474758 |
T |
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| Q |
209 |
atatcacttcctaactcctttaacttaataggagtgcgtatgaaataatcatgttaaaaagaacttctatagtttaaaaactaaattaaaaagagtaata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
47474757 |
atatcacttcctaactcctttaacttaataggagtgcgtatgaaagaatcatgttaaaaacaacttttatagtttaaaaactaaattaaaaagagtgata |
47474658 |
T |
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| Q |
309 |
ttatttaaaactcttatgtctcatc |
333 |
Q |
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||||||||||||||||||||||||| |
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| T |
47474657 |
ttatttaaaactcttatgtctcatc |
47474633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 333 - 489
Target Start/End: Complemental strand, 47474582 - 47474424
Alignment:
| Q |
333 |
cataatgtgagccaaccgtgatgttaaaattgttccctacctcatttaccacaaattaaccagacaagatattttacaaaccgatgttcactt-----ca |
427 |
Q |
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| T |
47474582 |
cataatgtgagccaaccgtgatgttaaaatttttccctacctcatttaccacaaattaaccagacaagatattttacaaaccgatgttcacttcacttca |
47474483 |
T |
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| Q |
428 |
ctcctcctcaacccataccgtgcaataagaatgagatgtgccttgttgtctatgatctatgt |
489 |
Q |
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| T |
47474482 |
ctcctcctcaacccataccgtgcaataagaatgagatgtgcc---ttgtctatgatctatgt |
47474424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 22056625 - 22056548
Alignment:
| Q |
174 |
gctcattgactaccaggccgctaccagaactactcatatcacttcctaactcctttaacttaataggagtgcgtatga |
251 |
Q |
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|||||||| || ||||| | |||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
22056625 |
gctcattgtctgccaggacactaccagaactactcagatcgcttcctaattcctttaatttaataggagtgcgtatga |
22056548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 16608918 - 16608976
Alignment:
| Q |
193 |
gctaccagaactactcatatcacttcctaactcctttaacttaataggagtgcgtatga |
251 |
Q |
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||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
16608918 |
gctaccagaactactcaggtcgcttcctaactcctttaatttaataggagtgcgtatga |
16608976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 22050335 - 22050277
Alignment:
| Q |
193 |
gctaccagaactactcatatcacttcctaactcctttaacttaataggagtgcgtatga |
251 |
Q |
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||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
22050335 |
gctaccagaactactcaggtcgcttcctaactcctttaatttaataggagtgcgtatga |
22050277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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