View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_7 (Length: 485)
Name: NF7566_low_7
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28523868 - 28524137
Alignment:
| Q |
1 |
tcacttgtaattataggatactagtaatgtcataattgtaaccggtaaatagttcaaattgttttaaaattgtacaacttcattgtacaaacatgtctt- |
99 |
Q |
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| T |
28523868 |
tcacttgtaattataggatactagtaatgtcataattgtaaccgttaaatagttcaaattgttttaaaattgtacaacatcattgtacaaacatgagata |
28523967 |
T |
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| Q |
100 |
ta------tacattcgtgtacaaggagtactagtcaaacccgtgaacacaaagacaccaagaacaaattaaaacaaaagtgtatcttctttgtgtgattg |
193 |
Q |
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| T |
28523968 |
tacaacagtacatttgtgtaaaagaagtactagtcaaacccttgaacacaaagacaccaagaacaaattaaaacaaaagtgtatcttctttgtgtgattg |
28524067 |
T |
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| Q |
194 |
gggtttctcataggagcttgcataacacgaaacaaagaagaaaccccctttagtccttccctaccacatg |
263 |
Q |
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| T |
28524068 |
gggtttctcataggagcttgcataacacgaaacaaagaagaaaccccctttagtccttccctaccacatg |
28524137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 320 - 469
Target Start/End: Original strand, 28524194 - 28524343
Alignment:
| Q |
320 |
atcaattgaagatcatgaaaagagttggaacaataaaagtagatgatagcgtttagacaaaggattgaatacccaacttgaataggtaatagtaaactga |
419 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28524194 |
atcatttgaatatcatgaaaagagttggaacaataaaagtagatgatagcgtttagacaaaggattgaatacccaacttgaataggtaatagtaaactga |
28524293 |
T |
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| Q |
420 |
tcatgtagataaaaagcatgacaaatctaagagcaatggatctcacatgt |
469 |
Q |
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| T |
28524294 |
tcatgtagataaaaagcatgacaaatctaagagcaatggatctcacatgt |
28524343 |
T |
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