View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7566_low_8 (Length: 465)
Name: NF7566_low_8
Description: NF7566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7566_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 49686493 - 49686955
Alignment:
| Q |
1 |
ctcaacaaaactgctacgaaacacgtccagtttaccaaagga----------ttcaagttacaaacattaaaaatgagcggtccaacactatttccattg |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49686493 |
ctcaacaaaactgctacgaaacacgtccagtttaccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcccaacactatttccattg |
49686592 |
T |
|
| Q |
91 |
ttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatgatatcactctccctcctccctctccttttggaactttttatat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686593 |
ttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatgatatcactctccctcctccctctccttttggaactttttatat |
49686692 |
T |
|
| Q |
191 |
gaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686693 |
gaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgat |
49686792 |
T |
|
| Q |
291 |
ttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcac |
390 |
Q |
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| T |
49686793 |
ttttacttcggtgattcaacaatatctaatgatgagcccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcac |
49686892 |
T |
|
| Q |
391 |
tttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcatatt |
453 |
Q |
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| T |
49686893 |
tttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcatatt |
49686955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 74 - 452
Target Start/End: Original strand, 49690842 - 49691220
Alignment:
| Q |
74 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctct |
170 |
Q |
| |
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|||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||| || ||||||| |||| || |||||||||||| || |
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| T |
49690842 |
caacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccact |
49690941 |
T |
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| Q |
171 |
ccttttggaactttttatatgaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaata |
270 |
Q |
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| T |
49690942 |
ccttttggaactttttttatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaata |
49691041 |
T |
|
| Q |
271 |
gtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgt |
370 |
Q |
| |
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|| | |||| || ||||||||||||||| || |||| |||||| | ||||||||||||||||||||||| |||||||| | || ||||||||||| |
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| T |
49691042 |
gttcttgtcatccctatgatttttactttggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgt |
49691138 |
T |
|
| Q |
371 |
cattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcatat |
452 |
Q |
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|| | ||||||| ||||||||||| ||||||||||||| || ||| || |||||||||||||| | ||| ||||||||||| |
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| T |
49691139 |
caatgaattaggctttgcactttccggtaacccatttccctttttaactaatgaaattacctttcagttccaatcttcatat |
49691220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 74 - 452
Target Start/End: Original strand, 49679207 - 49679586
Alignment:
| Q |
74 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctct |
170 |
Q |
| |
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|||||||||||||||| |||| | ||| |||||||||||||| |||| |||||||| ||||| || ||| ||| |||| || |||| |||| ||||| |
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| T |
49679207 |
caacactatttccattattgaccccaatatcaccaagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctct |
49679306 |
T |
|
| Q |
171 |
ccttttggaactttttat-atgaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaat |
269 |
Q |
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|||||||||||||||| | |||||| || ||||||||||||||||||||| || ||||| |||||||| || | | || |||| ||||||||||| |||| |
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| T |
49679307 |
ccttttggaacttttttttatgaaaaactacataacagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaat |
49679406 |
T |
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| Q |
270 |
agtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctg |
369 |
Q |
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||| | |||| || ||||||||||||||| || |||| |||||| | ||||||||||||||||||||||| |||||||| | || |||||||||| |
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| T |
49679407 |
agttcttgtcatccctatgatttttactttggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctg |
49679503 |
T |
|
| Q |
370 |
tcattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcatat |
452 |
Q |
| |
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||| | ||||||| ||||||||||| || || ||||||| ||| |||| |||| |||| |||||| | |||||| |||||||| |
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| T |
49679504 |
tcaatgaattaggctttgcactttccggcaatccatttccattcttagatgatcaaataacctttcagttcaaaccttcatat |
49679586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49679118 - 49679159
Alignment:
| Q |
1 |
ctcaacaaaactgctacgaaacacgtccagtttaccaaagga |
42 |
Q |
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| T |
49679118 |
ctcaacaaaactgctatgaagcacgtccagttaaccaaagga |
49679159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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