View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7567_high_2 (Length: 230)
Name: NF7567_high_2
Description: NF7567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7567_high_2 |
 | |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27878026 - 27878255
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27878026 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
27878125 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27878126 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaag |
27878225 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27878226 |
agtgtagagccttctctttaagaatattct |
27878255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 30968287 - 30968180
Alignment:
| Q |
123 |
agaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagagtgtagagccttctctttaag |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30968287 |
agaagccatgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagagtgtagagccttctctttaag |
30968188 |
T |
|
| Q |
223 |
aatattct |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
30968187 |
aatattct |
30968180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30968371 - 30968283
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaag |
89 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30968371 |
tcataaaagtgaagagtatcagatatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
30968283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 8480156 - 8480291
Alignment:
| Q |
34 |
tttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctcattttccgctattttgaaatcagaagccgtga |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| | |||||| ||||| ||||||| || | |||| |
|
|
| T |
8480156 |
tttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgtttattttcagctatcatgaaatctgatgttgtga |
8480255 |
T |
|
| Q |
134 |
gttgagaaaatagcgtattcagggtgttgatgtgat |
169 |
Q |
| |
|
| |||| |||||| ||||||| |||||| ||||||| |
|
|
| T |
8480256 |
gctgagcaaatagtgtattcatggtgtttatgtgat |
8480291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41719410 - 41719181
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41719410 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
41719311 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41719310 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaag |
41719211 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41719210 |
agtgtagagccttctctttaagaatattct |
41719181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34353013 - 34352784
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34353013 |
tcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
34352914 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34352913 |
cattctccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaag |
34352814 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34352813 |
agtgtagagccttctctttaagaatattct |
34352784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 23319292 - 23319063
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||| ||||||| |||| || || || ||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||| ||||| | |
|
|
| T |
23319292 |
tcatcaaaatgaagagagtcagcaatattgttgtttgtaatgttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcacgtt |
23319193 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
||||||| ||||| ||| ||| || || ||||| |||| |||||| ||||| | ||| || ||||||| |||| ||| |||| ||| |||||| || |
|
|
| T |
23319192 |
cattttcagctatcatgacatctgaggctgtgagctgagcaaatagtgtatttatggtatttatgtgatttgttattgatatggactcatacattcagag |
23319093 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||| ||| || |||||||| ||||| |
|
|
| T |
23319092 |
agtgtagaacctcctttttaagaaaattct |
23319063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 31502540 - 31502590
Alignment:
| Q |
28 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactc |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31502540 |
ttattatttgtaatgttgatgatgagttgatcatacgaatcttgtaaactc |
31502590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 48701138 - 48701367
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48701138 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
48701237 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48701238 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaag |
48701337 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48701338 |
agtgtagagccttctctttaagaatattct |
48701367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 42266903 - 42266674
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42266903 |
tcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
42266804 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
42266803 |
cattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattcgaag |
42266704 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42266703 |
agtgtagagccttctctttaagaatattct |
42266674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30949500 - 30949729
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
30949500 |
tcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagcacgct |
30949599 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
30949600 |
cattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattcgaag |
30949699 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30949700 |
agtgtagagccttctctttaagaatattct |
30949729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 1999857 - 1999723
Alignment:
| Q |
35 |
ttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctcattttccgctattttgaaatcagaagccgtgag |
134 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| |||||||| |||||| ||||||| || || ||||| |
|
|
| T |
1999857 |
ttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctgtgag |
1999758 |
T |
|
| Q |
135 |
ttgagaaaatagcgtattcagggtgttgatgtgat |
169 |
Q |
| |
|
||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
1999757 |
ttgaggaaatagtgtattcatggtatttatgtgat |
1999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 21514391 - 21514582
Alignment:
| Q |
38 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttg |
137 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||| |||| || |||| |||||| | | | |||| |||||| |||| |||||| |||| || ||||| |
|
|
| T |
21514391 |
taatgttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactctctcactttccgttattctgaaatttgaagttgtaagttg |
21514490 |
T |
|
| Q |
138 |
agaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagagtgtagagccttctctttaagaatattc |
229 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| ||| | ||||||||| ||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
21514491 |
gaaaaataacgtatttagggtattgatgtgatatgttgttgtcttggattcactcattcgaagagtgtagagccttatttttaagaatattc |
21514582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5822592 - 5822821
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5822592 |
tcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
5822691 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5822692 |
cattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaag |
5822791 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5822792 |
agtgtagagccttctctttaagaatattct |
5822821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2816580 - 2816809
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
2816580 |
tcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagcacgct |
2816679 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2816680 |
cattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaag |
2816779 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2816780 |
agtgtagagccttctctttaagaatattct |
2816809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 42585927 - 42585728
Alignment:
| Q |
31 |
ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctcattttccgctattttgaaatcagaagccg |
130 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| |||||||| |||||| ||||||| || || | |
|
|
| T |
42585927 |
ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg |
42585828 |
T |
|
| Q |
131 |
tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagagtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| ||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
42585827 |
tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattct |
42585728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 47277124 - 47277323
Alignment:
| Q |
28 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttca--gcacgctcattttccgctattttgaaatcaga |
125 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || |||| ||||| ||||| |||||||| ||| ||||||||||||| || | ||| ||| |
|
|
| T |
47277124 |
ttattgttggtaatgttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgaga |
47277223 |
T |
|
| Q |
126 |
agccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagagtgtagagccttctctttaagaat |
225 |
Q |
| |
|
|| ||||| ||||||||| || |||||| |||||| ||||||| ||| || |||||||||||| |||||| ||||||| | |||| ||||| ||| |
|
|
| T |
47277224 |
agttgtgagatgagaaaattgcatattcaaggtgtt-atgtgatatgtt--tgacgtggattcacccgttcaaaaagtgtagtgtcttccttttaataat |
47277320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 25877693 - 25877604
Alignment:
| Q |
141 |
aaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagagtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |||| ||| |||||||| |||||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
25877693 |
aaatagtgtattcatggtgtttatgtgatttgttattgatatggattcattcattcaaagagtatagagcctcctttttaagaaaattct |
25877604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9443409 - 9443638
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9443409 |
tcattaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
9443508 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
9443509 |
cattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattcgaag |
9443608 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9443609 |
agtgtagagccttctctttaagaatattct |
9443638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 24597829 - 24598028
Alignment:
| Q |
31 |
ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctcattttccgctattttgaaatcagaagccg |
130 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| |||||||| |||||| ||||||| || || | |
|
|
| T |
24597829 |
ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg |
24597928 |
T |
|
| Q |
131 |
tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagagtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| ||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
24597929 |
tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattct |
24598028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 826479 - 826250
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
826479 |
tcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgct |
826380 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
826379 |
cattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattcgaag |
826280 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
826279 |
agtgtagagccttctctttaagaatattct |
826250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13843114 - 13843341
Alignment:
| Q |
1 |
tcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgct |
100 |
Q |
| |
|
||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||| ||| || || ||| |||||| |||||||| || ||| |
|
|
| T |
13843114 |
tcatcaaagtgaagagtgtcaactatattgttatttgtaatgttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaacatgct |
13843213 |
T |
|
| Q |
101 |
cattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaag |
200 |
Q |
| |
|
||||||| |||||| |||||||||||| || |||||||||||||| ||||||| ||| || ||||||| |||| ||||||||||||| ||||| ||| |
|
|
| T |
13843214 |
cattttctgctattatgaaatcagaagttgtaagttgagaaaatagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattctaag |
13843313 |
T |
|
| Q |
201 |
agtgtagagccttctctttaagaatatt |
228 |
Q |
| |
|
|||||||||||| | |||||||||||| |
|
|
| T |
13843314 |
agtgtagagcctcccatttaagaatatt |
13843341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 8137777 - 8138004
Alignment:
| Q |
3 |
atcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctca |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
8137777 |
atcaaagtgaagagtatcagctatgttattatttggaatgttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccacacgctca |
8137876 |
T |
|
| Q |
103 |
ttttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcaaagag |
202 |
Q |
| |
|
||||||||||||||||||| ||||| | || || |||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |
|
|
| T |
8137877 |
ttttccgctattttgaaattagaagttgggattttagaaaataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattcgaagag |
8137976 |
T |
|
| Q |
203 |
tgtagagccttctctttaagaatattct |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
8137977 |
tgtagagcctcctctttaagaatattct |
8138004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 46452619 - 46452552
Alignment:
| Q |
38 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtggaagttcagcacgctcatttt |
106 |
Q |
| |
|
|||||||||||||||||| |||||| | |||| |||||| |||||| |||||| ||||| |||||||| |
|
|
| T |
46452619 |
taatgttgatgatgagttcatcata-ggatctaataaactatgaagtagaagtttagcacactcatttt |
46452552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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