View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7567_low_2 (Length: 241)

Name: NF7567_low_2
Description: NF7567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7567_low_2
NF7567_low_2
[»] chr3 (9 HSPs)
chr3 (1-224)||(11494937-11495160)
chr3 (29-209)||(5968369-5968549)
chr3 (33-209)||(11488727-11488903)
chr3 (71-209)||(2922082-2922220)
chr3 (99-199)||(3872685-3872786)
chr3 (87-187)||(10080260-10080360)
chr3 (87-187)||(10187230-10187330)
chr3 (116-165)||(909088-909137)
chr3 (78-163)||(4132862-4132947)
[»] chr4 (1 HSPs)
chr4 (1-217)||(5991069-5991285)
[»] chr1 (1 HSPs)
chr1 (94-224)||(17314296-17314426)
[»] scaffold0603 (1 HSPs)
scaffold0603 (22-199)||(2201-2378)
[»] chr5 (1 HSPs)
chr5 (1-218)||(16449330-16449547)
[»] chr8 (1 HSPs)
chr8 (32-199)||(18390615-18390782)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11494937 - 11495160
Alignment:
Q  1 tccctcgcttcctttgcaattttgctttcagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11494937 tccctcgcttcctttgcaattttgctttcagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaag 11495036  T
Q  101 tttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495037 tttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgtt 11495136  T
Q  201 acaagcgatttaggtagaagtggc 224  Q
     |||||||||||||||||||||||    
T  11495137 tcaagcgatttaggtagaagtggc 11495160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 5968549 - 5968369
Alignment:
Q  29 cagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaagtttgggagcgttcacaatctcaaggttt 128  Q
    |||||| ||||||  ||||||| |||  ||||||||  ||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||    
T  5968549 cagtaacggacagtgagtcatacttagtactgaaagagaggaaggcaatcctttttttggcaatgactttagtttgggagcgttaacaatctcaaggttt 5968450  T
Q  129 tggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgttacaagcgat 209  Q
    |||||||| || ||||||| || ||||||| ||||||| ||| || ||||||||||||| ||||||||| | |||||||||    
T  5968449 tggagagaagtcagatgttgaagccacttcccatcaattcttgtaccattaagaccacaaatgcatagtctcacaagcgat 5968369  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 11488727 - 11488903
Alignment:
Q  33 aatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaagtttgggagcgttcacaatctcaaggttttgga 132  Q
    ||||| |||| |||||||||||  ||||||||  ||||||||||||| ||||| ||||| ||||| ||||||||||| || | |||||||||||||||||    
T  11488727 aatgggcagcgagtcatatttagtactgaaagagaggaaggcaatcctttttttggcaatgacttgagtttgggagcattaataatctcaaggttttgga 11488826  T
Q  133 gagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgttacaagcgat 209  Q
    |||| |||||||||| || ||||||| |||||| |||| ||| |||||||| || | |||||||||| |||||||||    
T  11488827 gagaagtgagatgttgaagccacttcccatcaaggcttgtattattaagactactggtgcatagtgtaacaagcgat 11488903  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 2922220 - 2922082
Alignment:
Q  71 aggcaatccctttttcggcaacgacttaagtttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgctt 170  Q
    ||||||||| ||||| |||||||| || ||||||||||| || ||||||||||| |||||||||||||||||||||| || ||||||| ||||||| |||    
T  2922220 aggcaatcctttttttggcaacgaattgagtttgggagcattaacaatctcaagcttttggagagaggtgagatgttgaagccacttcccatcaattctt 2922121  T
Q  171 ttatcattaagaccacagatgcatagtgttacaagcgat 209  Q
     || |||||| ||||| |||||||||  | |||||||||    
T  2922120 gtaccattaaaaccacggatgcatagcatcacaagcgat 2922082  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 3872786 - 3872685
Alignment:
Q  99 agtttgggagcgttcacaatctcaaggtttt-ggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagt 197  Q
    |||||||||||||| |||||||||| ||||| ||||||| |||||||||| || ||||||| |||| |||||| ||| | |||||||||| |||||||||    
T  3872786 agtttgggagcgttaacaatctcaaagtttttggagagaagtgagatgttgaagccacttcccatcgatgcttgtattaataagaccacaaatgcatagt 3872687  T
Q  198 gt 199  Q
    ||    
T  3872686 gt 3872685  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 10080360 - 10080260
Alignment:
Q  87 ggcaacgacttaagtttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccac 186  Q
    ||||||||||  |||||||||||||| ||||||||||||||| |||||||  ||||||||  |||||||||| |||| | | || ||||| |||||||||    
T  10080360 ggcaacgactcgagtttgggagcgttaacaatctcaaggtttcggagagaactgagatgtaaaaaccacttcccatccaagtttgtatcagtaagaccac 10080261  T
Q  187 a 187  Q
    |    
T  10080260 a 10080260  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 10187330 - 10187230
Alignment:
Q  87 ggcaacgacttaagtttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccac 186  Q
    ||||||||||  |||||||||||||| ||||||||||||||| |||||||  ||||||||  |||||||||| |||| | | || ||||| |||||||||    
T  10187330 ggcaacgactcgagtttgggagcgttaacaatctcaaggtttcggagagaactgagatgtaaaaaccacttcccatccaagtttgtatcagtaagaccac 10187231  T
Q  187 a 187  Q
    |    
T  10187230 a 10187230  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 909088 - 909137
Alignment:
Q  116 aatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaa 165  Q
    |||||||||||||||||||||||||||||| || | ||||||| ||||||    
T  909088 aatctcaaggttttggagagaggtgagatggtcgagccacttcccatcaa 909137  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 4132947 - 4132862
Alignment:
Q  78 ccctttttcggcaacgacttaagtttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatc 163  Q
    |||||||| ||||||||||| || |||||||| |  | ||| ||||  | |||||||||||||||||||| || ||||||| ||||    
T  4132947 cccttttttggcaacgacttgagcttgggagcatcaataatatcaaaatgttggagagaggtgagatgttgaagccacttcccatc 4132862  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5991285 - 5991069
Alignment:
Q  1 tccctcgcttcctttgcaattttgctttcagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaag 100  Q
    ||||||||||||| ||||| ||||||  |||||||||||| | ||| ||| |||  ||||||||  ||||||||||||| | ||| ||||| ||||| ||    
T  5991285 tccctcgcttcctctgcaactttgctaccagtaatggacaacgagtaatacttagtactgaaagagaggaaggcaatccttcttttggcaatgacttgag 5991186  T
Q  101 tttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgtt 200  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5991185 tttgggagcgttaacaatctcaaggttttggagaaaggtgagatgttgaaaccacttcccatcaatgcttttatcattaagaccacggatgcatagtgtt 5991086  T
Q  201 acaagcgatttaggtag 217  Q
    ||||| |||||||||||    
T  5991085 acaagtgatttaggtag 5991069  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 17314426 - 17314296
Alignment:
Q  94 acttaagtttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgca 193  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||| |||||||||||  |||||    
T  17314426 acttcagtttgggggcgttaacaatctcaaggttttggagagaagtgagatgttgaagccacttctcatcaatgcttgtattattaagaccacctatgca 17314327  T
Q  194 tagtgttacaagcgatttaggtagaagtggc 224  Q
    |||||| |||||||||  |||||| ||||||    
T  17314326 tagtgtaacaagcgatgcaggtagcagtggc 17314296  T

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Target: scaffold0603 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 2201 - 2378
Alignment:
Q  22 ttgctttcagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaagtttgggagcgttcacaatctc 121  Q
    |||||| |||||||||||||  |||||||||||  ||| ||||  ||||||| ||||| || || |||||| || | |||||  |||| || ||||||||    
T  2201 ttgcttccagtaatggacagtgagtcatatttagcactaaaagagaggaaggaaatcctttctttggcaacaacctgagtttcagagcattaacaatctc 2300  T
Q  122 aaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgt 199  Q
    ||||||||||||||| |||||||||| || |||||||  ||||||||||||| || ||| ||||||||||||||||||    
T  2301 aaggttttggagagaagtgagatgttgaagccacttccaatcaatgcttttaccactaaaaccacagatgcatagtgt 2378  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 16449547 - 16449330
Alignment:
Q  1 tccctcgcttcctttgcaattttgctttcagtaatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaag 100  Q
    |||||||||||||  |||   ||||||  ||||||||||| | ||||||| |||  ||||||||  ||||||| ||||| ||||| || |||  ||| ||    
T  16449547 tccctcgcttcctgcgcacacttgcttctagtaatggacaccgagtcatacttagcactgaaagagaggaaggaaatccttttttaggaaacatcttgag 16449448  T
Q  101 tttgggagcgttcacaatctcaaggttttggagagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgtt 200  Q
    ||||||||| || | ||||||||| ||||||||||||  |||||||| || ||||||| ||||||||| | ||||| ||||||||||||||||||||||     
T  16449447 tttgggagcattaataatctcaagtttttggagagagacgagatgttgaagccacttcccatcaatgcgtgtatcagtaagaccacagatgcatagtgtc 16449348  T
Q  201 acaagcgatttaggtaga 218  Q
    | |||||||  |||||||    
T  16449347 agaagcgatgcaggtaga 16449330  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 18390782 - 18390615
Alignment:
Q  32 taatggacagcaagtcatatttataactgaaagccaggaaggcaatccctttttcggcaacgacttaagtttgggagcgttcacaatctcaaggttttgg 131  Q
    ||||||||| ||||||| |||||  ||||||||  ||||| ||||| | ||||| ||||||||||| |||||||||||||| |||||||||||||||||     
T  18390782 taatggacaacaagtcacatttagtactgaaagagaggaaagcaattctttttttggcaacgacttgagtttgggagcgttaacaatctcaaggttttga 18390683  T
Q  132 agagaggtgagatgttcaaaccacttctcatcaatgcttttatcattaagaccacagatgcatagtgt 199  Q
    ||||| |  ||||||| || ||||||| ||||||  ||| |||||| ||||||  |||||||||||||    
T  18390682 agagaaggaagatgttgaagccacttcccatcaaatcttgtatcatcaagaccggagatgcatagtgt 18390615  T

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