View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7568_high_1 (Length: 675)
Name: NF7568_high_1
Description: NF7568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7568_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Complemental strand, 61344 - 60857
Alignment:
| Q |
17 |
aatcatgtgattcttttt--ataagaaaagaaactgtttacctacttaaatgaaaataaaaaatcaattaaatgttttcatatgaatttgaaatttatgt |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
61344 |
aatcatgtgattctttttttataagaaaagaaactgtttacctacttaaatgaaaataaaaaatcaattaaatgttttcatatgaatttgaaatttatgt |
61245 |
T |
|
| Q |
115 |
gagtttttcaaaaattctctgttttggcaatttcatcttaagagaagtgaagaagaaaaacgtcccaaatttatcggtttgagtaggcttaaataagcaa |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
61244 |
gagtttttcaaaaattccctgttttggcaatttcatcttaagagaagtgaagaaaaaaaacgtcccaaatttatcggtttgagtaggcttaaataagcaa |
61145 |
T |
|
| Q |
215 |
atcaagcatgtaaattcgtgtgtttttggtcttcgctcttgtatcnnnnnnngttctaaaacaaataccgtaagttataaaatatgttgggatgtgctat |
314 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
61144 |
atcaaccttgtaaattcgtgtgtttttggtcttcgctcttgtatctttttttgttctaaaacaaata-cgtaagttataaaatattttggtatgtgctat |
61046 |
T |
|
| Q |
315 |
cattatttgttacaaaaacatagatgtggcaaacagaggatgatattgctcgcgacatgtaacataacagacgacatataagataaggggtgtaggaacg |
414 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
61045 |
cattatttgttacaaaaacatatatgtggcaaacggaggatgatatggctcgcgacatgtaagataacagacaacatataagataaggggtgtaggaacg |
60946 |
T |
|
| Q |
415 |
agaaatataaaataaaagatgtgaagttgaagagtgtttaggcccattaagttgggctgggcttatatatggaaaagtgagtgagtctt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60945 |
agaaatataaaataaaagatgtgaagttgaagagtgtttaggcccattaagttgggctgggcttatatatggaaaagtgagtgagtctt |
60857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 571 - 661
Target Start/End: Complemental strand, 60789 - 60699
Alignment:
| Q |
571 |
tggcgttgcattggttggaagctatgttacctttgggaataattgctggaatgctttgtgttatgggtaacgctcagtattacatccacag |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
60789 |
tggcgttgcattggttggaagctatgttacctttgggaataattgctggaatgctttgcgttatgggtaacgctcagtattacatccacag |
60699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University