View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7568_high_2 (Length: 627)
Name: NF7568_high_2
Description: NF7568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7568_high_2 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Complemental strand, 14609649 - 14609037
Alignment:
| Q |
18 |
acatcactactaagcgaacaccaataagcaacctgcaaattaatgaaatataggcacaatcagatgcaattataactaaatcgctaagatatacatttaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609649 |
acattactactaagcgaacaccaataagcaacctgcaaattaatgaaatataggcacaatcagatgcaattataactaaatcgctaagatatacatttaa |
14609550 |
T |
|
| Q |
118 |
tcctatagtaattatttttagttatatacaacatttacatattgcatatataataaccaacctatatggacttatgatgccatttggaactgatcttttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609549 |
tcctatagtaattatttttagttatatacaacatttacatattgcatatataataaccaacctatatggacttatgatgccatttggaactgatcttttt |
14609450 |
T |
|
| Q |
218 |
cggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttcatcgtctggaggccaatatgcattgccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609449 |
cggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttcatcgtctggaggccaatatgcattgccaa |
14609350 |
T |
|
| Q |
318 |
ctccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctcttcataactgacatattgtttttggaaccaggtgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609349 |
ctccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctcttcataactgacatattgtttttggaaccaggtgg |
14609250 |
T |
|
| Q |
418 |
agccagtaatggtagtgctgcattgtcataatcttg---atcatcctcgtattctcctactttgtaaggctctctacaaccgggacacatgccagtatcg |
514 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609249 |
agccagtaatggtagtgctgcagtgtcataatcttggttatcatcctcgtattctcctactttgtaaggctctctacaaccgggacacatgccagtatcg |
14609150 |
T |
|
| Q |
515 |
ctttgggcatctataaaacaatctctgcaaatcttgtacctgataaattggtattattatatattctagttagtttttattgtcacaataatatatacta |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609149 |
ctttgggcatctataaaacaatctctgcaaatcttgtacctgataaattggtattattatatattctagttagtttttattgtcacaataatatatacta |
14609050 |
T |
|
| Q |
615 |
ttataaaatttga |
627 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14609049 |
ttataaaatttga |
14609037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 176 - 381
Target Start/End: Original strand, 14599023 - 14599228
Alignment:
| Q |
176 |
aacctatatggacttatgatgccatttggaactgatctttttcggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccat |
275 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || | || ||| ||||||||||||||||| ||||| ||| |||||||||||||| || | |||| |
|
|
| T |
14599023 |
aacctatatggagttatgatgccatttggaattggtgttcttctacacaaaggcttccaaggtttctcggaaccatcaaatactccttcatttagaccag |
14599122 |
T |
|
| Q |
276 |
cacctccattttcatcgtctggaggccaatatgcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttg |
375 |
Q |
| |
|
| | ||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14599123 |
cctcatcatctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttg |
14599222 |
T |
|
| Q |
376 |
atttct |
381 |
Q |
| |
|
|||||| |
|
|
| T |
14599223 |
atttct |
14599228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 460 - 590
Target Start/End: Original strand, 14599289 - 14599420
Alignment:
| Q |
460 |
ctcgtattctcctactttgtaaggctctctacaaccgggacacatgccagtatcgctttgggcatctataaaacaatctctgcaaatcttgtacctgat- |
558 |
Q |
| |
|
||||||||||||||||||| | ||||| |||| ||||||||| |||| || || | || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14599289 |
ctcgtattctcctactttgaatggctccttacatccgggacacgtgccggtttctttctgcgcatctataaaacaatctctacaaatcttgtacctgata |
14599388 |
T |
|
| Q |
559 |
aaattggtattattatatattctagttagttt |
590 |
Q |
| |
|
|||||||||||||| | || ||| |||||||| |
|
|
| T |
14599389 |
aaattggtattattttgtaatcttgttagttt |
14599420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 15420564 - 15420619
Alignment:
| Q |
308 |
gcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaa |
363 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
15420564 |
gcatttccaattccataggttcctttagtctcaaacaaccatctattatgatcaaa |
15420619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University