View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7568_high_3 (Length: 369)
Name: NF7568_high_3
Description: NF7568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7568_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 2249646 - 2250001
Alignment:
| Q |
18 |
gttggaattcgttggagattattaaatgtagttgaagt------------caatgagtgtgagatagactttatatagtgtcccaaccgcatttagaatc |
105 |
Q |
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| T |
2249646 |
gttggaattcgttggagattattaaatgtagttgaagttggttaggattacaatgagtgtgagatagactttatatagtgtcccaaccgcatttagaatc |
2249745 |
T |
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| Q |
106 |
tccacggttgggattttctagcattcatggagacaggacattggtggtcgtttgatcaagatcatacgattcaaattcaaactttatattttaaattgta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249746 |
tccacggttgggattttctagcattcatggagacaggacattggtggtcgtttgatcaagatcatacgattcaaattcaaactttatattttaaattgta |
2249845 |
T |
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| Q |
206 |
aaattaaagtcttgcatttgtttggaccgtttaatctagatcga--------actatcactgatgtcttgaatgtgagatcccctggtggcagggaatcc |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2249846 |
aaattaaagtcttgcttttgtttggaccgtttaatctagatcgaactatcacactatcactgatgtcttgaatgtgagatccccgggtggcagggaatcc |
2249945 |
T |
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| Q |
298 |
aaattcaatcctaactaagttttaactatctttaataatctcctactaattctaac |
353 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2249946 |
aaattcaatcctaacttagttttaactatctttaataatctcctactaattctaac |
2250001 |
T |
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