View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7568_low_1 (Length: 742)
Name: NF7568_low_1
Description: NF7568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7568_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 69 - 667
Target Start/End: Original strand, 3576575 - 3577172
Alignment:
| Q |
69 |
tgtgccaatgcaatgaatgttaatgatgatcatgcaggaaatgtaaattattcttccaaaat---ctttactatcatatcaccagtaataaatatctttc |
165 |
Q |
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| T |
3576575 |
tgtgccaatgcaatgaatgttaatgatgatcatgcaagaaatgtaaattattcttccaaaatattctttactatcatatcaccagtaatacatcgctttc |
3576674 |
T |
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| Q |
166 |
ttaatcactttttctatatannnnnnnnatttactgttgtcctctgcaggaaattaagactataagaaaatgtcttaattaaggatttcttttagggcct |
265 |
Q |
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| T |
3576675 |
tcaatcactttttctatatattttttt--tttactgttgtcctctgcaggaaattaagactataagaaaatgtcttaattaagggtttcttttagggcct |
3576772 |
T |
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| Q |
266 |
tccaataaacactgcataatgcattggtcactttgaatcttaaatgatagatttacataatttaagtaaggttggtggtgcctaagatcatgtttattac |
365 |
Q |
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| T |
3576773 |
tccaataaacacagcataatgcattggtcactttgaatcttaaatgatagatttacataatttaagtaaggttggtggtgcctaagatcatgtttattac |
3576872 |
T |
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| Q |
366 |
ttcttctactataaagggtaatgctccacaatgtgaaaattttatgatgttagctttgataattcagaagttctggtggagcagtactttagtatcaatt |
465 |
Q |
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| T |
3576873 |
ttcttctactataaagggtaatgctccacaatgtgaaaattttatgatgttagctttgataattcagaagttctggtggagcagtactttagtatcaatt |
3576972 |
T |
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| Q |
466 |
attttctcattattgtttgcgtcagtttgatagtttccattgcaaagatttgatatgaagaacaagatgaattattgttttttgagagtagcatatgaaa |
565 |
Q |
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| T |
3576973 |
attttctcattattgtttgcgtcagtttgatagtttccattgcaaagatttgatatgaagaacaagatgaattattgttttttgagagtagcatatgaac |
3577072 |
T |
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| Q |
566 |
aaagaaacatatatacttagaaaagttaaatagaagaaagggattaatattagtcaacaaaatacacctcnnnnnnnntattcatccgttattcaaaata |
665 |
Q |
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| T |
3577073 |
aaagaaac--atatacttagaaaagttaaatagaagaaagggattaatattagtaaacaaaatacacctcaaaaaaaatattcatccgttattcaaaata |
3577170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 3576486 - 3576549
Alignment:
| Q |
14 |
tttcgtgttattaatttagtgaaatattcggtgcatttagatctttcttcaagtttgtgccaat |
77 |
Q |
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| T |
3576486 |
tttcgtgttattaatttagtgaaatattcggtgcatttagatctttcttcaagtttgtgccaat |
3576549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 3584717 - 3584671
Alignment:
| Q |
23 |
attaatttagtgaaatattcggtgcatttagatctttcttcaagttt |
69 |
Q |
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| T |
3584717 |
attaatttagtgaaatatttggtgcatttggatcgttgttcaagttt |
3584671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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