View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7568_low_5 (Length: 356)
Name: NF7568_low_5
Description: NF7568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7568_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 6341160 - 6341495
Alignment:
| Q |
6 |
gaagaatatcttgatttaataaagattcaggtaacatattttacaagttccttcatactaagatttattgttaacaatatcctaagtaggttacataatt |
105 |
Q |
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| T |
6341160 |
gaagaatatcttgatttaataaagattcaggtaacatattttacaagttccttcatactaagatttattgttaacaatatcctaagtaggttacataatt |
6341259 |
T |
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| Q |
106 |
gttttaacaattagaaatgacaatgtgattcatattctaactaagagatttgttgcagcaagctgtggaaaagctggaaatgagtggaagtgaagattct |
205 |
Q |
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| T |
6341260 |
gttttaacacttagaaatgacaatgtgattcatattctaactaagagatttgttgcagcaagctgcggaaaagctggaaatgagtggaagtgaagattct |
6341359 |
T |
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| Q |
206 |
gcggtggaaatactggaaaggaacgtaaagaaggctgaaaatgcgaacaaaccacatgaagtttacgaaattgaaatgttcctagtagaaatgctcatct |
305 |
Q |
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||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6341360 |
gcggtggaagtactggaaagggccgtagagaaggctgaaaatgcgaacaaaccacatgaagtttacgaaattgaaatgttcctagtagaaatgctcatct |
6341459 |
T |
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| Q |
306 |
ataaggttgaaaaatctcaacttctcactatactct |
341 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6341460 |
ataaggttgaaaaatctcaacttctcactatactct |
6341495 |
T |
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