View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7568_low_6 (Length: 347)
Name: NF7568_low_6
Description: NF7568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7568_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 44642594 - 44642301
Alignment:
| Q |
15 |
aaattatcatctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagattaatttgct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44642594 |
aaattatcatctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagattaatttgct |
44642495 |
T |
|
| Q |
115 |
ttgattctgcaactgaagaacgacttagtaggttagactagtgcataattacttgcttgaaattgggtgtgacatttctagtaatatcttggaaggggat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
44642494 |
ttgattctgcaactgaagaacgacttagtaggttagactagtgcataattacttgcttgaaatagggtgtgacatttgtagtaatatcttggaaggggat |
44642395 |
T |
|
| Q |
215 |
cctcatactgtgctaagttgctggtttttgttgatttagtatcgagttgagaagttaacaagcttatcacaattattagtagctcaagtgcaac |
308 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44642394 |
cctcatactgtgctaagatgctggtttttgttgatttagtatcgagttgagaagttaacaagcttatcacaattattagtagctcaagtgcaac |
44642301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 44687453 - 44687304
Alignment:
| Q |
22 |
catctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagattaatttgctttgattc |
121 |
Q |
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||||||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44687453 |
catctcaatcaatttaatagaaaaacta---agtctttcttcaacaatacggctaagttaataatgagatgctaggtggtag----atttgctttgattc |
44687361 |
T |
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| Q |
122 |
tgcaactgaagaacgacttagtaggt----tagactagtgcataattacttgcttga |
174 |
Q |
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||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
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| T |
44687360 |
tgcaactgaagaacgacttagatggtttaatagactggtgcataattacttgcttga |
44687304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 44668121 - 44667967
Alignment:
| Q |
28 |
aatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagattaatttgctttgattctgcaac |
127 |
Q |
| |
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||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44668121 |
aatcaatttattagaaaaacta---agtctttcttcaacaatacggctaagttaataatgagatgctaggtggtag----atttgctttgattctgcaac |
44668029 |
T |
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| Q |
128 |
tgaagaacgacttagtaggt----tagactagtgcataattacttgcttgaaattgggtgtg |
185 |
Q |
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|||||||| |||||| ||| |||||| ||||||||||||||||||||| | ||||||| |
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|
| T |
44668028 |
tgaagaacaacttagatggtttaatagactggtgcataattacttgcttgaagtagggtgtg |
44667967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 45094930 - 45094818
Alignment:
| Q |
22 |
catctcaatcaatttgttagaaaaattattaagtctttcttcaacaatacagctaagttaataatgagatgctaggtggtagattaatttgctttgattc |
121 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| |||||||||||| | | |||||||||||||||||| ||||| |||| |||||||||||| | |
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| T |
45094930 |
catctcaattaatttgttagaaaaatta---agtccttcttcaacaatgcggataagttaataatgagatggtaggtagtag----atttgctttgatcc |
45094838 |
T |
|
| Q |
122 |
tgcaactgaagaacgactta |
141 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
45094837 |
tgcaactgaagaacaactta |
45094818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 44687247 - 44687165
Alignment:
| Q |
195 |
gtaatatcttggaaggggatcctcatactgtgctaagttgctggtttttgttgatttagtatcgagttgagaagttaacaagct |
278 |
Q |
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|
||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||| |
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| T |
44687247 |
gtaatatcttggaagtggatc-tcatattgtgctaaggtgctggtttttgtagatttagtattgagtagagaagttaacaagct |
44687165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 44667917 - 44667839
Alignment:
| Q |
199 |
tatcttggaaggggatcctcatactgtgctaagttgctggtttttgttgatttagtatcgagttgagaagttaacaagct |
278 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||| ||||||||||||| |||||||||| |||| |||||||||||||||| |
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|
| T |
44667917 |
tatcttggatggggatc-tcatactttgctaaggtgctggtttttgtagatttagtattgagtagagaagttaacaagct |
44667839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 19566424 - 19566381
Alignment:
| Q |
63 |
caacaatacagctaagttaataatgagatgctaggtggtagatt |
106 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
19566424 |
caacaatgtagctaagttaataatgagatactaggtggtagatt |
19566381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 23684850 - 23684893
Alignment:
| Q |
63 |
caacaatacagctaagttaataatgagatgctaggtggtagatt |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
23684850 |
caacaatgtagctaagttaataatgagatgctaggaggtagatt |
23684893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 42416106 - 42416183
Alignment:
| Q |
200 |
atcttggaaggggatcctcatactgtgctaagttgctggtttttgttgatttagtatcgagttgagaagttaacaagct |
278 |
Q |
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||||||||||||||||| ||| ||| ||| | ||||||||||||||||| |||||| ||| | |||||||||||||| |
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| T |
42416106 |
atcttggaaggggatccggataatgtactacgatgctggtttttgttgatatagtat-aagtagggaagttaacaagct |
42416183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 8831398 - 8831353
Alignment:
| Q |
61 |
ttcaacaatacagctaagttaataatgagatgctaggtggtagatt |
106 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
8831398 |
ttcaacaatgtagctaagttaataatgagatgctaggcagtagatt |
8831353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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