View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_high_17 (Length: 278)
Name: NF7569_high_17
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 5381385 - 5381633
Alignment:
| Q |
14 |
gttcactgaggggttctaccagaaggacaggtcattgctgtcaagcaacataaattggctagttctcaaggtgatgttgagttttgctctgaggtagaag |
113 |
Q |
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| T |
5381385 |
gttcaccgaggggttctaccagaaggacaggtcattgctgtcaagcaacataaattggctagttctcaaggtgatgttgagttttgctctgaggtagaag |
5381484 |
T |
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| Q |
114 |
ttctgagctgtgctcagcaccggaatgttgttatgctgattggattttgtatagaggataagagaaggctactggtttatgagtacatatgcaatggatc |
213 |
Q |
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| T |
5381485 |
ttctgagctgtgctcagcaccggaatgttgttatgctgattggattttgtatagaggataagagaaggctactggtttatgagtacatatgcaatggatc |
5381584 |
T |
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| Q |
214 |
attggattcacatttatatggtgatttctctctttcaatcctaaattat |
262 |
Q |
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| T |
5381585 |
attggattcacatttatatggtgatttctctctttcaatcctaaattat |
5381633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 43072371 - 43072157
Alignment:
| Q |
28 |
tctaccagaaggacaggtcattgctgtcaagcaacataaattggctagttctcaaggtgatgttgagttttgctctgaggtagaagttctgagctgtgct |
127 |
Q |
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| T |
43072371 |
tctaccagaagggcaagtcattgctgtcaagcaacataaattggctagttctcagggtgatcatgaattctgctcagaggtagaagtcctgagttgtgca |
43072272 |
T |
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| Q |
128 |
cagcaccggaatgttgttatgctgattggattttgtatagaggataagagaaggctactggtttatgagtacatatgcaatggatcattggattcacatt |
227 |
Q |
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| T |
43072271 |
cagcaccggaatgttgttatgttgattggcttctgtattgaggataagagaaggctgctggtttatgaatatatatgcaacggatcattggacactcatt |
43072172 |
T |
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| Q |
228 |
tatatggtgatttct |
242 |
Q |
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|||||||| |||||| |
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| T |
43072171 |
tatatggtaatttct |
43072157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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