View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7569_high_2 (Length: 724)

Name: NF7569_high_2
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7569_high_2
NF7569_high_2
[»] chr5 (1 HSPs)
chr5 (13-708)||(1468003-1468698)


Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 13 - 708
Target Start/End: Original strand, 1468003 - 1468698
Alignment:
Q  13 aatattggagtattgtagaacccttcaacactccggcatgtataggaggtagaaattcattgaaggtgcaacagttctaggcggtctctgagattttatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  1468003 aatattggagtattgtagaacccttcaacactccggcatgtataggaggtagaagttaattgaaggtgcaacagttctaggcggtctctgagattttatt 1468102  T
Q  113 tcaacatgtatcttattttgatgtaaaattatcatattctcttacgaatctttgcatttgtaccaccaattttatagctagtgagtacaatcctgtaagc 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1468103 tcaacatgtatcttattttgatgtcaaattatcatattctcttacgaatctttgcatttttaccaccaattttatagctagtgagtacaatcctgtaagc 1468202  T
Q  213 tatagcaatgctaaattattgtgttttgctcattgatccacaattgatgagtgtattagttattacacaaacaagtaacgaagtattcattttagtatct 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1468203 tatagcaatgctaaattattgtgttttgctcattgatccacaattgatgagtgtattagttattgcacaaacaagtaacgaagtattcattttagtatct 1468302  T
Q  313 tgctaacttgaccaattggagtctagaaccttttggttgctatagcttgattaaccagaaccgtgaccttttggttgcttttgttagcccgaccttgaac 412  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1468303 tgctagcttgaccaattggagtctagaaccttttggttgctatagcttgattaaccagaaccatgaccttttggttgcttttgttagcccgaccttgaac 1468402  T
Q  413 agccggaggccggagccatggctggttcctgctggggagttctctttctagcatgaccatgggagccattctcatatactcgaacaaggagagtttaaga 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1468403 agccggaggccggagccatggctggttcctgctggggagttctcttgctagcatgaccatgggagccattctcatatactcaaacaaggagagtttaaga 1468502  T
Q  513 tccctctgcaaaatctaaaacaaaaatactttaccaataatgagttccaatctcaattccttttggaaaaagaaacgaaaaataacttggaaaacaacac 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  1468503 tccctctgcaaaatctaaaacaaaaatactttaccaataatgagttccaatctcaatttcttttggaaaaagaaacgaaaaataacttcgaaaacaacac 1468602  T
Q  613 actgacccacactgcggtcctattcacttataattgtgcaagnnnnnnnaccatcaacgtgtggtggcannnnnnnaccataataatagtaaccat 708  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||       ||||||||||||||||||||    
T  1468603 actgacccacactgcggtcctattcacttataattgtgcaagtttttttaccatcaaagtgtggtggcatttttttaccataataatagtaaccat 1468698  T

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