View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7569_high_7 (Length: 398)
Name: NF7569_high_7
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 79 - 385
Target Start/End: Complemental strand, 34564095 - 34563789
Alignment:
| Q |
79 |
cagttatcttatcttgagttgattgttatcataacaagagaacagaacatactactcagatacacgagggtgaaaagatattatgacgtggttttgttgt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34564095 |
cagttatcttatcttgagttgattgttatcataacaagagaacagaacatactactcagatacacgagggtgaaaagatattatgacgtggttttgttgt |
34563996 |
T |
|
| Q |
179 |
gtcagtgttatcctgtctccgaccgttttgtgttttgactccaaattcctataaatatatttctcattctcattcttatcttacattacatttttacgtt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34563995 |
gtcagtgttatcctgtctccgaccgttttgtgttttgactccaaattcctataaatatatttctcattctcattcttatcttacattacatttttacgtt |
34563896 |
T |
|
| Q |
279 |
acatactttactacattacagcaccaccatttatctatccatctatctatatattccattgcatttcatttccatttaccattcattcttcttgtaagtt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34563895 |
acatactttactacattacagcaccaccatttatctatctatctatctatatattccattgcatttcatttccatttaccattcattcttcttgtaagtt |
34563796 |
T |
|
| Q |
379 |
cctcttc |
385 |
Q |
| |
|
||||||| |
|
|
| T |
34563795 |
cctcttc |
34563789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University