View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_11 (Length: 367)
Name: NF7569_low_11
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 124 - 357
Target Start/End: Original strand, 44670674 - 44670907
Alignment:
| Q |
124 |
ggtagttattttattttttaaaaagtcattattttgaggnnnnnnntataacaaactgaaatttgatggcataaaacatcctattccacatatctaattc |
223 |
Q |
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| T |
44670674 |
ggtagttattttattttttaaaaagtcattattttgaggaaaaaaatataacaaactgaaatttgatggcataaaacatcctattccacatatctaattc |
44670773 |
T |
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| Q |
224 |
ggtgattaaaaagattttgctacgacatactactaagcatgaattggcaaacttgattcaaattcaattatataaagccaaaaataggattggtttgtca |
323 |
Q |
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| T |
44670774 |
ggtgattaaaaagattttgctacgacatactactaagaatgaattggcaaacttgattcaaattcaataatataaagccaaaaataggattggtttgtca |
44670873 |
T |
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| Q |
324 |
acgtgtaagaatacgtcaacgaattatgatgtcc |
357 |
Q |
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| T |
44670874 |
acgtgtaagaatacgtcaacgaattatgatgtcc |
44670907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 44670138 - 44670252
Alignment:
| Q |
1 |
tcattttttaaacagactctctattatgctccccttatttgtaatctcttgtaaatttggacgatgttggtgttatttccagcttttgagttaataaagt |
100 |
Q |
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| T |
44670138 |
tcattttttaaacagactctctattatgctccccttatttgtaatctcttgaaaatttggacgatgttggtgttatttccagcttttgagttaataaagt |
44670237 |
T |
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| Q |
101 |
tggcaccttccgtat |
115 |
Q |
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| T |
44670238 |
tggcaccttccgtat |
44670252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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