View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_19 (Length: 251)
Name: NF7569_low_19
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 46734705 - 46734481
Alignment:
| Q |
18 |
tcaacaatatcacggtgctatcgtcatttcaccaaattcacagtcaatccaaacatgcacaacatagttaagttgcttttcacccaatcatttacttttc |
117 |
Q |
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| T |
46734705 |
tcaacaatatcacggtgctatcgtcatttcaccaaattcacagtcaatccaaacatgcacaacatagttaagttgcttttcacccaatcatttacttttc |
46734606 |
T |
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| Q |
118 |
ttaatcatcatgccacaccaaaataataagtaaaataagacnnnnnnncacacattgacttttgatgcctcccagtcacataaatatttgatgatcaatc |
217 |
Q |
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| T |
46734605 |
ttaatcatcatgccacaccaaaataataagtaaaataagacaaaaaaacacacattgacttttgatgcctcccagtcacataaatatttgatgatcaatc |
46734506 |
T |
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| Q |
218 |
ataagtcacaacctatgaaacacca |
242 |
Q |
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| T |
46734505 |
ataagtcacaacctatgaaacacca |
46734481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 7892221 - 7892163
Alignment:
| Q |
19 |
caacaatatcacggtgctatcgtcatttcaccaaattcacagtcaatccaaacatgcac |
77 |
Q |
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||||||||||||||| | | || |||||||||||||||| ||||||||||||||||| |
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| T |
7892221 |
caacaatatcacggttccacagtgatttcaccaaattcaccatcaatccaaacatgcac |
7892163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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