View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_23 (Length: 222)
Name: NF7569_low_23
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 26200383 - 26200269
Alignment:
| Q |
17 |
aataactccattgtgtagaacatggattctgattcattttatgctggatgctgctgatttcagaaa-ggagaagattctctgtaccaatagcgaggtaat |
115 |
Q |
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| T |
26200383 |
aataactccattgtgtagaacatggattctgattcaatttatgctgcctgctgctgatttcagaaacgggaaacattctctgtaccaatagcgaggtaat |
26200284 |
T |
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| Q |
116 |
cattgaatcatattt |
130 |
Q |
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|||| |||| ||||| |
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| T |
26200283 |
cattcaatcttattt |
26200269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 26168223 - 26168119
Alignment:
| Q |
78 |
agaaaggagaagattctctgt--accaatagcgaggtaatcattgaatcatattttataataagaattattttttcgtgaaaagaaaaattaaacatgtt |
175 |
Q |
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||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| || ||||||||||| |
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| T |
26168223 |
agaaagggaaagattctctgtgtaccagtagcgaggtaatcattcaatcatattttataataagaattattttttcataaaaag--aagttaaacatgtt |
26168126 |
T |
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| Q |
176 |
tttaatc |
182 |
Q |
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||||||| |
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| T |
26168125 |
tttaatc |
26168119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 26123740 - 26123592
Alignment:
| Q |
30 |
tgtagaacatggattctgattcattttatgctggatgctgctgatttcagaaaggagaagattctctgt--accaatagcgaggtaatcattgaatcata |
127 |
Q |
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||||||||||||||||||||||| | ||||| || |||||| || ||||||| |||||||||||| |||| |||||||||||||||| |||| || |
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| T |
26123740 |
tgtagaacatggattctgattcaactactgctg-at--tgctgaattgagaaagggaaagattctctgtgtaccagtagcgaggtaatcattcaatcgta |
26123644 |
T |
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| Q |
128 |
ttttataataagaattattttttcgtgaaaagaaaaattaaacatgtttttaatc |
182 |
Q |
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|||||||||||||||||||||||| | || |||| |||||||||||||||||| |
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| T |
26123643 |
ttttataataagaattattttttc---ataaaaaaagttaaacatgtttttaatc |
26123592 |
T |
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