View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_4 (Length: 550)
Name: NF7569_low_4
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 50595704 - 50595170
Alignment:
| Q |
1 |
atgcgacaacttgggtcacgtgcgttacgctaccttgctcttcaagcaactccttcacccaaatatcttcacctacaacgctatcatcagaacctacgct |
100 |
Q |
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| T |
50595704 |
atgcgacaacttgggtcacgtgagttacgctaccctgctcttcaagcaactccttcacccaaatatcttcacctacaacgctatcatcagaacctacgct |
50595605 |
T |
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| Q |
101 |
cacaatcgccaccattcttcggcaatctctgtcttcattcaaatgctcacacattcaacaaattcagtttttccagacaaattcacgttcccttttgtga |
200 |
Q |
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| T |
50595604 |
cacaatcgccaccattcttcagcaatctctgtcttcgttcaaatgctcacacattcaacaaattcagtttttccagacaaattcacgttcccttttgtga |
50595505 |
T |
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| Q |
201 |
ttaaatcatgcacgggaattctgtgtcaccggcttggtatgcaggttcatgggctagtttacaaatttggagctgattctcactgtataaccgagaatgc |
300 |
Q |
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| T |
50595504 |
ttaaatcatgcacgggaattctgtgtcaccggcttggtatgcaggttcatgggctagtttacaaatttggagctgattttcactgtataaccgagaatgc |
50595405 |
T |
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| Q |
301 |
gttgattgatatgtatacaaaatttggggatttaaccaatgcgtgcaaggtatttgaggaaatgagtcatagagatgtgatttcttggaatagtttgata |
400 |
Q |
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| T |
50595404 |
gttgattgatatgtatacaaaatttggggatttaaccaatgcgtgcaaggtatttgaggaaatgagtcatagagatgtgatttcttggaatagtttgata |
50595305 |
T |
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| Q |
401 |
tttgggtatgtgaaattggggcagatgaatagggcaagggaactgtttgatgacatgcctgttaggacaattgtgtcttggacgactatgataactgggt |
500 |
Q |
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| T |
50595304 |
tttgggtatgtgaaattggggcagatgaatagtgcaagggaactgtttgatgacatgcctgttaggacaattgtgtcttggacgactatgataactgggt |
50595205 |
T |
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| Q |
501 |
atgggagaatgggttgttatggtgatgcattggat |
535 |
Q |
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| T |
50595204 |
atgggagaatgggttgttatggtgatgcattggat |
50595170 |
T |
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