View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_5 (Length: 519)
Name: NF7569_low_5
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 278741 - 278227
Alignment:
| Q |
1 |
catcctctgaacaataaccgcttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacattt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278741 |
catcctctgaacaataaccgcttaaggtctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacattt |
278642 |
T |
|
| Q |
101 |
aacattcctcttgttctttgggacctataatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
278641 |
aacattcctcttgttctttgggacctataatatcaaatgacaaggagaatttcagaaaatcaaaatccaaaccataaaccgtggtggaaaaggaaatgca |
278542 |
T |
|
| Q |
201 |
tatcagttggaaagaagaaataaaaaa---cagtagtaagggaaacatttagaagattcatgggccttctggcttctgtttgttacctcatttgagctcc |
297 |
Q |
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| T |
278541 |
tatcagttggaaagaagaaataaaaaacagcagtagtaagggagacatttagaagattcatgggc-------cttctgtttgttacctcatttgagctcc |
278449 |
T |
|
| Q |
298 |
tagatctttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaatttttgct |
397 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
278448 |
tagatctttttcctgaattttctgtgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaatttttgtt |
278349 |
T |
|
| Q |
398 |
agctagaacttgttcatcagattgtgttgtacatggagtgaatttggaataatctatggaaagacccatggaaatatagtcaaaagtggttactggattg |
497 |
Q |
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| T |
278348 |
agctagaacttgttcatcagattgtgttgtacatggagtgaatttggaataatctatggaaagacccatggaaatatagtcaaaagtggttactggattg |
278249 |
T |
|
| Q |
498 |
ttgttggagcaacttgttgtgg |
519 |
Q |
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|||||| | ||||||||||||| |
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| T |
278248 |
ttgttgaaacaacttgttgtgg |
278227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 447
Target Start/End: Original strand, 41800197 - 41800363
Alignment:
| Q |
281 |
tacctcatttgagctcctagatctttt-tcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcg |
379 |
Q |
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|||||| |||||||||||| ||||||| ||||||||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||||| ||| | |
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| T |
41800197 |
tacctcgtttgagctcctacatcttttttcctgaattttctgtgcttcttgttttatcttcttctagttcagaaactagtatttcacgttcc---ttttg |
41800293 |
T |
|
| Q |
380 |
ggcctgcaaatttttgctagctagaacttg--ttcatcagattgtgttgtacatggagtgaatttggaat |
447 |
Q |
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|||||||||||| ||| |||||||||||| || || | || |||||| |||||||||||||||||| |
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| T |
41800294 |
ggcctgcaaattcttggcagctagaacttgctctcgtcgggttcggttgtatatggagtgaatttggaat |
41800363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 41806086 - 41806256
Alignment:
| Q |
29 |
ctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttgggacctat |
128 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||||||||||||| | || | |||| ||||| |||||||| ||||||||| ||||||||| |
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| T |
41806086 |
ctgatgctgagaaccaggacgtgtattctcttcagtgcttatagaagcccgtcttacattctttctacagttaacatt-ctcttgttccgcgggacctat |
41806184 |
T |
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| Q |
129 |
aatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgcat |
201 |
Q |
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| T |
41806185 |
aaaatcaaataacaaggagaatctcacaaaatc-aaacacaaaccataaactttgcaggaaaaggaaatgcat |
41806256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 41799980 - 41800031
Alignment:
| Q |
28 |
tctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcaca |
79 |
Q |
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| T |
41799980 |
tctgatcctgagaaccaggacttgtattttcttcagtgcttatagaagcaca |
41800031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 41800036 - 41800138
Alignment:
| Q |
102 |
acattcctcttgttctttgggacctataatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgcat |
201 |
Q |
| |
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||||||| ||||||||| ||||||||||| ||||||| || ||| ||| | | |||||| ||| |||||||||||| ||| ||||||||||||||| |
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| T |
41800036 |
acattccccttgttcttcgggacctataaaatcaaataaccaggagaatctaacaaaatc-aaacacaaaccataaactgtgcaggaaaaggaaatgcac |
41800134 |
T |
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| Q |
202 |
atca |
205 |
Q |
| |
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|||| |
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| T |
41800135 |
atca |
41800138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 24653420 - 24653551
Alignment:
| Q |
6 |
tctgaacaataaccgcttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacat |
105 |
Q |
| |
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||||||||| || ||||||| |||||||||||||||||| ||||||||||||| |||||||| |||| |||| || || |||||||||||||||||| |
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| T |
24653420 |
tctgaacaacaattgcttaaggtctgatcctgagaaccaggacttgtattctctcaagtgcttacagaaccacatctcatgttcttcctacatttaacat |
24653519 |
T |
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| Q |
106 |
tcctcttgttctttgggacctataatatcaaa |
137 |
Q |
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|||||| |||||| |||||||||| |||||| |
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| T |
24653520 |
tcctctctttctttcggacctataaaatcaaa |
24653551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 24685159 - 24685277
Alignment:
| Q |
20 |
gcttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttcttt |
119 |
Q |
| |
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||||||| ||||||| |||||||||| || |||||||||||| ||||||||| || |||| || || ||||| | ||||||||||||||||||||||| |
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| T |
24685159 |
gcttaaggtctgatcttgagaaccaggacctgtattctcttctgtgcttataaaaccacatctcatattcttcatgcatttaacattcctcttgttcttg |
24685258 |
T |
|
| Q |
120 |
gggacctataatatcaaat |
138 |
Q |
| |
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||||||||||| ||||||| |
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| T |
24685259 |
gggacctataaaatcaaat |
24685277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 24682423 - 24682535
Alignment:
| Q |
28 |
tctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaac---attcctcttgttctttgggac |
124 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||| |||| |||| || || |||||||||||||||| |||||||| |||||| |||| |
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| T |
24682423 |
tctgatcctgagaaccagcacttgtattctcttaagtgcttacagaaccacatctcatgttcttcctacatttaacattattcctctctttctttcggac |
24682522 |
T |
|
| Q |
125 |
ctataatatcaaa |
137 |
Q |
| |
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|||||| |||||| |
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| T |
24682523 |
ctataaaatcaaa |
24682535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 24685374 - 24685478
Alignment:
| Q |
268 |
ggcttctgtttgt-tacctcatttgagctcctagatctttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcac |
366 |
Q |
| |
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||||| ||||||| ||||||| | |||||||||| ||||||||||||||| ||| ||||| |||||||||| ||| |||| ||||||||||||| ||| |
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| T |
24685374 |
ggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggttttatcatctcgtggtccagaaactagtatgtcat |
24685473 |
T |
|
| Q |
367 |
gttcc |
371 |
Q |
| |
|
||||| |
|
|
| T |
24685474 |
gttcc |
24685478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 24631760 - 24631957
Alignment:
| Q |
21 |
cttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttg |
120 |
Q |
| |
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|||||| |||||||| | ||||||| ||||||||| |||| ||| |||||||| || | || || ||||| ||||||||| |||||||||||||||| |
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| T |
24631760 |
cttaaggtctgatccggcgaaccaggacttgtattttcttttgtgattatagaaccaaatctcatattcttcatacatttaa--ttcctcttgttctttg |
24631857 |
T |
|
| Q |
121 |
ggacctataatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgcatatcagttggaa-agaagaa |
219 |
Q |
| |
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|||| |||| ||||||| || ||| ||| ||| |||||| ||| || |||||||| ||| ||||||| ||||| ||||||| |||||| ||||||| |
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| T |
24631858 |
ggactaataaaatcaaataaccgggataatctcacaaaatcgaaa-acagaccataaattgtgttggaaaaagaaatccatatcacttggaagagaagaa |
24631956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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