View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_6 (Length: 412)
Name: NF7569_low_6
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 33229089 - 33229488
Alignment:
| Q |
1 |
ttattaatctgtatgaaatggtcaaa-tgcgacaattattgtgcgacagagagagtatgatatactgttgctaaatatgacagatgataacgacgcgtgg |
99 |
Q |
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| T |
33229089 |
ttattaatctgtatgaaatggtcaaaatgcgacaattattgtgcgacagagagagtatgatatactgttgctaaatatgacagatgataacgacgcgtgg |
33229188 |
T |
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| Q |
100 |
caccgcagaatgtgcacaccagacaacaatgtgggttctccatcacctcagaggcttctcttgggaagcaaaagcattgataactctagctgcattctct |
199 |
Q |
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| T |
33229189 |
cacagcagaatgtgcacaccagacaacaatgtgggttctccatcacctcagaggcttctcttgggaagcaaaagcattgataactctagctgcattctct |
33229288 |
T |
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| Q |
200 |
ttggagtatggtgcaattatgcatcttcataggattcaatcatcagacacacttggaaactcattgaagcaacttagccaagttcaattcagaaaggttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33229289 |
ttggagtatggtgcaattatgcatcttcataggattcaatcatcagacacacttggaaactcattgaagcaacttagccaagttcaattcagaaaggttc |
33229388 |
T |
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| Q |
300 |
ctgccgatataactgaacttgtcacattcttattgcaagtgttacaagacattaaaacttgtgcagcatggtctgctttcggttatgacttggatgatgt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
33229389 |
ctgccgatataactgaacttgtcacattcttattgcaagtgttacaagacattaaaacttgggcagcatggtctgctttcggttatgacttggacgatgt |
33229488 |
T |
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