View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7569_low_8 (Length: 392)
Name: NF7569_low_8
Description: NF7569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7569_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 199 - 385
Target Start/End: Original strand, 26683031 - 26683217
Alignment:
| Q |
199 |
acaagaagaagaagggctcattctcataatccttgtgatgatgcattttgtccacatcgttctcatacatttcatcaaatttcttgtgcatctaaaatgt |
298 |
Q |
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| T |
26683031 |
acaacaagaagaagggctcattctcataatccttgtgatgatgcattttgtccacatcgttctcatacatttcatcaaatttcttgtgcatctaaaatgt |
26683130 |
T |
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| Q |
299 |
gcatggctgaactaccttattgtttgtctgattgtcaaagtccttctgatccatgcctctatgaagtcaggtttgtttatattcttc |
385 |
Q |
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| T |
26683131 |
gcttggctgaactaccttattgtttgtctgattgtcaaagtccttctgatccatgcctctatgaagtcaggtttgtttattttcttc |
26683217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26682830 - 26682949
Alignment:
| Q |
1 |
agagatgttgaaattggtgaatattttgttggtgttacagttggaacaccaggtcaaaagttttggcttattgctgatacaggaagtgagttaacatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26682830 |
agagatgttgaaattggtgaatattttgttggtgttacagttggaacaccaggtcaaaagttttggcttattgctgatacaggaagtgagttaacatggt |
26682929 |
T |
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| Q |
101 |
ttaaatgtatgaaaaaggtt |
120 |
Q |
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| T |
26682930 |
ttaaatgtatgaaaaaggtt |
26682949 |
T |
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