View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7570_high_1 (Length: 604)
Name: NF7570_high_1
Description: NF7570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7570_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 38553208 - 38552748
Alignment:
| Q |
17 |
caagtaaaacattttccattgtcttaatctgaaaatgatcttactatcaccattgtcgggcattcaatgtaggttagatgatagtaatctattggatact |
116 |
Q |
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| T |
38553208 |
caagtaaagcattttccattgtcttaatctgaaaatgatcttagtatcaccattgtcgggcactcaatgtaggttagatgatagtaatctattggatact |
38553109 |
T |
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| Q |
117 |
ttttcttcaaaccaattttccaatgaaacaagattttaatggcttctattttgttaatgttttcttcatggtgttatgttttgatgtttgaatcgaagaa |
216 |
Q |
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| T |
38553108 |
ttttcttcaaaccaattttccaatgaaacaagattttaatggcttctattttgttaatgttttcttcatggtgttatgttttgatgtttgaatcgaagaa |
38553009 |
T |
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| Q |
217 |
acaagatttgaaggaaaagataaccttaacatcatgttcttgattcagcaagttgaggctcaacatgtgactgcaatcttgggtggtacgcaattgcagc |
316 |
Q |
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| T |
38553008 |
acaagatttg-----aaagataaccttaacatcatgttcttgattcaacaagttgaggctcaacatgtgactgcaatcttgggtggtacgcaattgcagc |
38552914 |
T |
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| Q |
317 |
aatgatggatgtttgtgtcttcaagtactatgatgtttaaaaattaaggtaaaaaactaatagtatgaagtttgttacgagcttctagtttcttttttnn |
416 |
Q |
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| T |
38552913 |
aatgatggatgtttgtgtcttcaagtactatgatgtttaaaaattaaggtgaaaaactaatagtatgaagtttgttacgagcttctagtttcttttttaa |
38552814 |
T |
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| Q |
417 |
nnnnntggaacaggtggttttaggtatgaagagaaggagaaaatgaaatagggaaagagaatggtt |
482 |
Q |
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| T |
38552813 |
aaaaatggaacaggtggttttaggcatgaagagaaggagaaaatgaaatagggaatgagaatggtt |
38552748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 38552018 - 38551965
Alignment:
| Q |
491 |
aaattcattaagattgaacacctaaatatacaaaattaaaagtactaaaactta |
544 |
Q |
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| T |
38552018 |
aaattcattaagatttaacaccttaatatacaaaattaaaagtactaaaactta |
38551965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 38587071 - 38587135
Alignment:
| Q |
17 |
caagtaaaacattttccattgtcttaatctgaaaatgatcttactatcaccattgtcgggcattc |
81 |
Q |
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| T |
38587071 |
caagtaaaacattttccattgtcttaatctgaaaatgatcttagtcttaccattgtcgggcattc |
38587135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 31342801 - 31342858
Alignment:
| Q |
27 |
attttccattgtcttaatctgaaaatgatcttactatcaccattgtcgggcattcaat |
84 |
Q |
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| T |
31342801 |
attttccattgtcttaatgtggaaatgatcttagtatcaccattgtcgggcattcaat |
31342858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 47373518 - 47373588
Alignment:
| Q |
160 |
ttctattttgttaatgttttcttcatggtgttatgttttgatgtttgaatcgaagaaacaagatttgaagg |
230 |
Q |
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| T |
47373518 |
ttctgttttattgatgttttcttcatggtgatgggttttgatgtttgaatcaaacaaacaagatttgaagg |
47373588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 47385408 - 47385338
Alignment:
| Q |
160 |
ttctattttgttaatgttttcttcatggtgttatgttttgatgtttgaatcgaagaaacaagatttgaagg |
230 |
Q |
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| T |
47385408 |
ttctgttttgttgattttttcttcttggtggtgggttttgatgtttgaatcaaagaaacaagttttgaagg |
47385338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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