View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7570_low_2 (Length: 441)
Name: NF7570_low_2
Description: NF7570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7570_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 982775 - 983186
Alignment:
| Q |
14 |
attattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcaagtctactgattcacccttcaactctcaaacaattcttcaacccagagtta |
113 |
Q |
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| T |
982775 |
attattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcatgtctattgattcacccttcaactctcaaacaattcttcaacccagagtta |
982874 |
T |
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| Q |
114 |
actcagtcaagctttcaaaaatcgttcgatgcaacaagtctctcaaccgacctccatgtgattatgttataatgttgtatgttgtgttcactgattgaga |
213 |
Q |
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| T |
982875 |
actcagtcaggctttcagaaatcattcgatgcaacaagtctctcaaccgacctccacgtgattatgttataatgttgtatgttgtgttcactgattgaga |
982974 |
T |
|
| Q |
214 |
ttgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtgaactgaactgctatggtaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
982975 |
ttgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatgaactgaactgctatggtaa |
983074 |
T |
|
| Q |
314 |
attaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttg |
413 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983075 |
attaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttg |
983174 |
T |
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| Q |
414 |
atgatgtaaatg |
425 |
Q |
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| T |
983175 |
atgatgtaaatg |
983186 |
T |
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