View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7570_low_3 (Length: 427)
Name: NF7570_low_3
Description: NF7570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7570_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 54978333 - 54977928
Alignment:
| Q |
9 |
gaagaatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaactttttgccccggccatatgtggatgcttgtc |
108 |
Q |
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| T |
54978333 |
gaagaatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaactttttgccccggccatatgtggatggttgtc |
54978234 |
T |
|
| Q |
109 |
caaaccgttactcaactttctacgcttatggttg---tcgaatctttctggcgaatccattggttggttatcaggagttggtggtgtccacactgtataa |
205 |
Q |
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| T |
54978233 |
caaaccgttactcaactttctacgcttatggttgcagtcgaatctttctggcgaatccattggttggttatcaggagttggtggtgtccacactgtataa |
54978134 |
T |
|
| Q |
206 |
ttctccgccaaatcatcatcaattcgtagcttgcaatcaaaaacttcttcaattattggatactccaaaggaggattatgtgcttcagacgcatcagaag |
305 |
Q |
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| T |
54978133 |
ttctccgccaaatcatcatcaattcgtagcttgcaatcaaaaacttcttcaattattggatactccaaaggaggattatgtgcttcagacgcatcagaag |
54978034 |
T |
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| Q |
306 |
tgtctggcacatttactgattttgatggcatatttgaggacaaagattcatccatcctaaattaaataaatatcatggaattcagaaattcagcacatca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54978033 |
tgtctggcacatttactgattttgatggcatatttgaggacaaagattcatccatcctaaattaaataaatatcatggaattcagaaattcagcacatca |
54977934 |
T |
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| Q |
406 |
aaattt |
411 |
Q |
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| T |
54977933 |
aaattt |
54977928 |
T |
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