View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7570_low_4 (Length: 391)
Name: NF7570_low_4
Description: NF7570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7570_low_4 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 15036669 - 15036308
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
15036669 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaat |
15036570 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||| ||| |
|
|
| T |
15036569 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaag |
15036470 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggt |
318 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15036469 |
gcttgagcaattcttcaaactctctggaactaggcctctgaactggttaagtgcagcagtgaatgtttttaacttcccaccgacacaaatattgtgaggt |
15036370 |
T |
|
| Q |
319 |
aaatgaccaataaatttattatcagataattcgagtacttccaaatccgtaagcctgttcat |
380 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15036369 |
aaatgaccaataaatttattatcatataattcgagtacttccaaatccgtaagcctattcat |
15036308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 15010649 - 15010288
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
15010649 |
agttctggtggtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaatttggagaaagatgaccataaaaat |
15010550 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
15010549 |
tattatcactcaattccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaag |
15010450 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggt |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
15010449 |
gcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaatgtttttaacttcccaccaacacaaatattgtgaggt |
15010350 |
T |
|
| Q |
319 |
aaatgaccaataaatttattatcagataattcgagtacttccaaatccgtaagcctgttcat |
380 |
Q |
| |
|
|||||||||| ||| ||||||||||||| | ||||||||||||||| ||||||| ||||| |
|
|
| T |
15010349 |
aaatgaccaacaaaaatattatcagataaatggagtacttccaaatcgataagcctattcat |
15010288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 15024763 - 15024405
Alignment:
| Q |
22 |
tctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaattat |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
15024763 |
tctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattat |
15024664 |
T |
|
| Q |
122 |
tatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggt |
221 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||| |||||| | |
|
|
| T |
15024663 |
tatcattcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggct |
15024564 |
T |
|
| Q |
222 |
tgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaa |
321 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15024563 |
taagcaattcttcaaactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaa |
15024464 |
T |
|
| Q |
322 |
tgaccaataaatttattatcagataattcgagtacttccaaatccgtaagcctgttcat |
380 |
Q |
| |
|
||||||| ||| |||||| || ||| | |||| |||||||||| |||||||| ||||| |
|
|
| T |
15024463 |
tgaccaacaaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcat |
15024405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 15032104 - 15031746
Alignment:
| Q |
22 |
tctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaattat |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
15032104 |
tctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattat |
15032005 |
T |
|
| Q |
122 |
tatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggt |
221 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||| |||||| | |
|
|
| T |
15032004 |
tatcattcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggct |
15031905 |
T |
|
| Q |
222 |
tgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaaa |
321 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15031904 |
taagcaattcttcaaactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaa |
15031805 |
T |
|
| Q |
322 |
tgaccaataaatttattatcagataattcgagtacttccaaatccgtaagcctgttcat |
380 |
Q |
| |
|
||||||| ||| |||||| || ||| | |||| |||||||||| |||||||| ||||| |
|
|
| T |
15031804 |
tgaccaacaaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcat |
15031746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 15016764 - 15016409
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
15016764 |
agttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaatttgaccatacaaat |
15016665 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15016664 |
tattatcactcaattccatgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaag |
15016565 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggt |
318 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
15016564 |
gcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagagcagcagagaatttttccaacttcccaccgacacaaatattatgaggt |
15016465 |
T |
|
| Q |
319 |
aaatgaccaataaatttattatcagataattcgagtacttccaaatccgtaagcct |
374 |
Q |
| |
|
|||||||||| ||| ||||||||| | || |||||| ||| |||||| |||||||| |
|
|
| T |
15016464 |
aaatgaccaacaaaattattatcatacaaatcgagtgctttcaaatcggtaagcct |
15016409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 15001756 - 15001395
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
15001756 |
agttctggtggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaat |
15001657 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| || | |||| |||| |
|
|
| T |
15001656 |
tattatcactcaaatccatgtattccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaag |
15001557 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggt |
318 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
15001556 |
gcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggt |
15001457 |
T |
|
| Q |
319 |
aaatgaccaataaatttattatcagataattcgagtacttccaaatccgtaagcctgttcat |
380 |
Q |
| |
|
|||||||||| ||| |||||||||||||| | ||||||||||||||| |||||||| ||||| |
|
|
| T |
15001456 |
aaatgaccaacaaaattattatcagataaatggagtacttccaaatctgtaagcctattcat |
15001395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 14523089 - 14523315
Alignment:
| Q |
21 |
ttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaatta |
120 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||| || ||| ||||||||| |
|
|
| T |
14523089 |
ttctggtggtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgcacttcccccaatttggagaaagataaccataaaaatta |
14523188 |
T |
|
| Q |
121 |
ttatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaaggg |
220 |
Q |
| |
|
|||||||| || || ||||||||||| |||||||||||||||||||| |||||||||||||| |||| || |||||| | ||| || | ||| ||||| |
|
|
| T |
14523189 |
ttatcacttaattctatgtagtccaaatttggatacacaccaaaactatctgttatatttcctgtcattttgttttggttaagtctcaatcttataaggc |
14523288 |
T |
|
| Q |
221 |
ttgagcaattcttcaaactctctggaa |
247 |
Q |
| |
|
| || || ||||||||||||||||||| |
|
|
| T |
14523289 |
tagaacagttcttcaaactctctggaa |
14523315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 14503629 - 14503301
Alignment:
| Q |
21 |
ttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaatta |
120 |
Q |
| |
|
|||| ||||||| |||| |||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||| || | ||| || || |||||| |
|
|
| T |
14503629 |
ttcttgtggtatatttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaaatta |
14503530 |
T |
|
| Q |
121 |
ttatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaaggg |
220 |
Q |
| |
|
|| |||||||| |||||||||||||| | |||||| |||||||||| ||||||||||||||||| | ||| |||| | |||||| | ||| ||||| |
|
|
| T |
14503529 |
ttttcactcaattccatgtagtccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggc |
14503430 |
T |
|
| Q |
221 |
ttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaattcttttaacttcccaccgacacaaatattgtgaggtaa |
320 |
Q |
| |
|
| ||||||||||| ||||||| ||||| | | |||||||| |||||| ||||||||| | | | ||| | ||||| |||||||| ||||||||||| |
|
|
| T |
14503429 |
tggagcaattctttaaactctttggaattggccctgtgaattggttattactagcagtgaaatttgtcaacattccaccaacacaaatgttgtgaggtaa |
14503330 |
T |
|
| Q |
321 |
atgaccaataaatttattatcagataatt |
349 |
Q |
| |
|
||| || || || |||||||||||||||| |
|
|
| T |
14503329 |
atggcctatgaaattattatcagataatt |
14503301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 15040403 - 15040161
Alignment:
| Q |
21 |
ttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaatta |
120 |
Q |
| |
|
|||| ||||||| || || ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||| || |||||||| || || | ||| |
|
|
| T |
15040403 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatattta |
15040304 |
T |
|
| Q |
121 |
ttatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaaggg |
220 |
Q |
| |
|
||| ||||||| |||||||||| |||||||||| |||||||||| || |||||||||||||||| ||||||||||| ||||| || | |||||| || |
|
|
| T |
15040303 |
ttaccactcaattccatgtagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagac |
15040204 |
T |
|
| Q |
221 |
ttgagcaattcttcaaactctctggaactaggcctgtgaactg |
263 |
Q |
| |
|
|||| |||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
15040203 |
ttgaacaattcttcaaactctttggaattggacctgtgaactg |
15040161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 14533208 - 14533456
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||| || ||||| || ||||||| |
|
|
| T |
14533208 |
agttcttgaggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaat |
14533307 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| |||| | ||| ||||| | ||| |||| ||| |||| |
|
|
| T |
14533308 |
tattatcactcaattccatgtagtccaaatttggatacacgccaaaggcatcagttatattgtcagttatttgattttgttgaagtcttactctgataag |
14533407 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
267 |
Q |
| |
|
| ||||| ||||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
14533408 |
actggagcacttcttcaaactctttggaattgggcctgtgaattggtta |
14533456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 14467452 - 14467204
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||| | ||||||| |||| |||||||||| |||| ||||||||||| || || | ||| || || |||| |
|
|
| T |
14467452 |
agttctggcggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaattcggtgatagatggccatacaaat |
14467353 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||| ||||| || |||||||| |||| ||||| ||||| | |||||||| ||| | ||| |
|
|
| T |
14467352 |
tattatcactcaattccatgtagtccaattttggatgcacgccaaaggcatcagttatattgtcagttagttgattttgttgaagccttactctataaag |
14467253 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
267 |
Q |
| |
|
| | ||||| ||||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
14467252 |
gctagagcagttcttcaaactctttggaattgggcctgtgaattggtta |
14467204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 267
Target Start/End: Complemental strand, 6095 - 5892
Alignment:
| Q |
64 |
aggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||| || ||||| || ||||||||||||| |
|
|
| T |
6095 |
aggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaa |
5996 |
T |
|
| Q |
164 |
aactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactg |
263 |
Q |
| |
|
| || |||||||||||| |||||||||||||||| | ||| || | |||||||||| |||||||||| || ||||||| ||||||||| || ||||||| |
|
|
| T |
5995 |
agctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaactg |
5896 |
T |
|
| Q |
264 |
gtta |
267 |
Q |
| |
|
|||| |
|
|
| T |
5895 |
gtta |
5892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 12428 - 12187
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||| || ||||| || ||||||| |
|
|
| T |
12428 |
agttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaat |
12329 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
|||||||||| || ||||||||| |||| | |||||| |||||||||| ||||||||||||||||| | ||| |||| | |||||| | ||| |||| |
|
|
| T |
12328 |
tattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataag |
12229 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaa |
260 |
Q |
| |
|
| | |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12228 |
gctggagcaattcttcaaactcattggaactaatcctgtgaa |
12187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 267
Target Start/End: Complemental strand, 6739 - 6536
Alignment:
| Q |
64 |
aggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||| || ||||| || ||||||||||||| |
|
|
| T |
6739 |
aggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaa |
6640 |
T |
|
| Q |
164 |
aactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactg |
263 |
Q |
| |
|
| || |||||||||||| |||||||||||||||| | ||| || | |||||||||| |||||||||| || ||||||| ||||||||| || ||||||| |
|
|
| T |
6639 |
agctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaactg |
6540 |
T |
|
| Q |
264 |
gtta |
267 |
Q |
| |
|
|||| |
|
|
| T |
6539 |
gtta |
6536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 13071 - 12830
Alignment:
| Q |
19 |
agttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaatatgaccgtaaaaat |
118 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||| || ||||| || ||||||| |
|
|
| T |
13071 |
agttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaat |
12972 |
T |
|
| Q |
119 |
tattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtctcttaag |
218 |
Q |
| |
|
|||||||||| || ||||||||| |||| | |||||| |||||||||| ||||||||||||||||| | ||| |||| | |||||| | ||| |||| |
|
|
| T |
12971 |
tattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataag |
12872 |
T |
|
| Q |
219 |
ggttgagcaattcttcaaactctctggaactaggcctgtgaa |
260 |
Q |
| |
|
| | |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12871 |
gctggagcaattcttcaaactcattggaactaatcctgtgaa |
12830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 16102468 - 16102283
Alignment:
| Q |
82 |
cactttccccaatttggagaaatatgaccgtaaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttc |
181 |
Q |
| |
|
|||||||||||||| | |||| || ||||||||||| || ||||| ||||| ||||| | ||| |||||||| |||| |||| | ||||||||||| |
|
|
| T |
16102468 |
cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc |
16102369 |
T |
|
| Q |
182 |
cagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
267 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||| ||| | | ||||||||||||||||||| |||||| |||| ||||| |||||| |
|
|
| T |
16102368 |
cagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta |
16102283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 16172146 - 16171961
Alignment:
| Q |
82 |
cactttccccaatttggagaaatatgaccgtaaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttc |
181 |
Q |
| |
|
|||||||||||||| | |||| || ||||||||||| || ||||| ||||| ||||| | ||| |||||||| |||| |||| | ||||||||||| |
|
|
| T |
16172146 |
cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc |
16172047 |
T |
|
| Q |
182 |
cagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
267 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||| ||| | | ||||||||||||||||||| |||||| |||| ||||| |||||| |
|
|
| T |
16172046 |
cagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta |
16171961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 17848087 - 17847959
Alignment:
| Q |
112 |
taaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttgatcaagccttagtc |
211 |
Q |
| |
|
||||||||||| | |||||| | |||||| ||||| || |||||||||||||| |||||||||||||||| ||||||||||| |||||||| | || |
|
|
| T |
17848087 |
taaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcctaattc |
17847988 |
T |
|
| Q |
212 |
tcttaagggttgagcaattcttcaaactc |
240 |
Q |
| |
|
| || | |||||||||||||||||||| |
|
|
| T |
17847987 |
ttacaatgcttgagcaattcttcaaactc |
17847959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 14605399 - 14605299
Alignment:
| Q |
167 |
tctctgttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtt |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| || | || ||| | | ||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
14605399 |
tctctgttatatttccagtaagttggttttgttcaagtctaatcctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggtt |
14605300 |
T |
|
| Q |
267 |
a |
267 |
Q |
| |
|
| |
|
|
| T |
14605299 |
a |
14605299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 16024577 - 16024482
Alignment:
| Q |
172 |
gttatatttccagtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
267 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| | ||||| ||| | | ||||||||||||||||||| |||||| |||| ||||| |||||| |
|
|
| T |
16024577 |
gttatatttccagtaagttggttttgttcaagtcgaagtcttataatgctagagcaattcttcaaactctttggaacgcggccagtgaagtggtta |
16024482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 15665775 - 15665941
Alignment:
| Q |
83 |
actttccccaatttggagaaatatgaccgtaaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttcc |
182 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||||||| ||| ||| ||||| | ||||| ||||| || ||||| ||| |||||||| ||||| |
|
|
| T |
15665775 |
actttccccaattggatgaaaggtgaccataaaaattattgtcatccaatcccatgaactccaaatttgggtatacacccaaatcatctgttatgtttcc |
15665874 |
T |
|
| Q |
183 |
agtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaact |
249 |
Q |
| |
|
| || ||||| || |||||||| ||||| ||||| | ||||||||||||||||| | ||||||| |
|
|
| T |
15665875 |
atccatatggttatgttcaagcctaagtctaataaggctagagcaattcttcaaactttttggaact |
15665941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 18643 - 18809
Alignment:
| Q |
83 |
actttccccaatttggagaaatatgaccgtaaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttcc |
182 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||||||| ||| ||| ||||| | ||||| ||||| || ||||| ||| |||||||| ||||| |
|
|
| T |
18643 |
actttccccaattagatgaaaggtgaccataaaaattattgtcatccaatcccatgaactccaaatttgggtatacacccaaatcatctgttatgtttcc |
18742 |
T |
|
| Q |
183 |
agtcagttggttttgatcaagccttagtctcttaagggttgagcaattcttcaaactctctggaact |
249 |
Q |
| |
|
| || ||||| || |||||||| ||||| ||||| | ||||||||||||||||| | ||||||| |
|
|
| T |
18743 |
atccatatggttatgttcaagcctaagtctaataaggctagagcaattcttcaaactttttggaact |
18809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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