View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7570_low_5 (Length: 352)
Name: NF7570_low_5
Description: NF7570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7570_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 44989749 - 44989584
Alignment:
| Q |
178 |
aaaacaatatgactgacttaatttataagatatnnnnnnngtagatttagataagatataattgcttgtatcttttatcttgactatgacataaaccata |
277 |
Q |
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| T |
44989749 |
aaaacaatatgactgacttaatttataagatataaaaaaagttgatttagataagatataattgcttctatcttttatcttgactatgacataaaccata |
44989650 |
T |
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| Q |
278 |
acgtgacttaatttaaaagtagactcgtatttgattgaatgtacaatttttctattctatatggtg |
343 |
Q |
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| T |
44989649 |
acgttacttaatttaaaaggataatcgtatttgattgaatgtacaatttttctattctatatggtg |
44989584 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44989867 - 44989747
Alignment:
| Q |
1 |
gaatgacagacatataatgaggtttcttggatagaccacagacagagttgcataccagatcaaaataaaacctagccgagcccaactgagactccctaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
44989867 |
gaatgacagacatataatgaggtttcttggatagaccagagacatagttgcataccagatc--aataa--------------taactgagactccctaaa |
44989784 |
T |
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| Q |
101 |
gacacaaagtcctagagcaatctcaccgaatagcaaa |
137 |
Q |
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| T |
44989783 |
gacacaaagtcctagagcaatctcaccgaatagcaaa |
44989747 |
T |
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