View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7570_low_6 (Length: 301)
Name: NF7570_low_6
Description: NF7570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7570_low_6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 3 - 301
Target Start/End: Original strand, 40068558 - 40068856
Alignment:
| Q |
3 |
atgagatgaaccggatcacatagtttaattaagcgtataatgacattgatttttgaatcaatagttaacaatccttaatcgatggaattaatgaatacta |
102 |
Q |
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| T |
40068558 |
atgagatgaaccgaatcacatagtttaattaaacgtataatgacattgatttttgaatcaatagttaacaatccttaatcgatggaattaatgaatacta |
40068657 |
T |
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| Q |
103 |
gtacatttccacctagcatgtgttaaatttaattttgggctaatatatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaataga |
202 |
Q |
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| T |
40068658 |
gtatatttccacctagcatgtgttaaatttaattttgggctaatatatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaataga |
40068757 |
T |
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| Q |
203 |
ggaattgggtttgaaatttcaagacaacttgctgaacatggagtaactgtaatattaacaacaagagatgctggtgttggcgttgaatcaattaaggtc |
301 |
Q |
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| T |
40068758 |
ggaattgggtttgaaatttcaagacaacttgctgaacatggagtaactgtaatattaacaacaagagatgctggtgttggcgttgaatcaattaaggtc |
40068856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 301
Target Start/End: Original strand, 44965414 - 44965567
Alignment:
| Q |
148 |
tatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagaggaattgggtttgaaatttcaagacaacttgctgaacatggagta |
247 |
Q |
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| T |
44965414 |
tatataaaggtggtggtccaaggaaactattgccgtggttaccggtggaaaccgaggaattggttttgagatttcaagacaacttgcagatcatggagtt |
44965513 |
T |
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| Q |
248 |
actgtaatattaacaacaagagatgctggtgttggcgttgaatcaattaaggtc |
301 |
Q |
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| T |
44965514 |
actgttgtgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtc |
44965567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 10898321 - 10898471
Alignment:
| Q |
148 |
tatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagaggaattgggtttgaaatttcaagacaacttgctgaacatggagta |
247 |
Q |
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| T |
10898321 |
tatatgtaggtggtggtctaaagaaactattgctgtggttaccggtggaaacagaggaattgggtttgagatttgcaggcaacttgctgctcatggattg |
10898420 |
T |
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| Q |
248 |
actgtaatattaacaacaagagatgctggtgttggcgttgaatcaattaag |
298 |
Q |
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| T |
10898421 |
actgttatactaacatcaagagatgctagtgctggtgctgaatcaattaag |
10898471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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