View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7571_high_1 (Length: 488)

Name: NF7571_high_1
Description: NF7571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7571_high_1
NF7571_high_1
[»] chr2 (2 HSPs)
chr2 (13-469)||(2038565-2039018)
chr2 (16-421)||(29963196-29963588)
[»] scaffold0172 (1 HSPs)
scaffold0172 (13-464)||(34709-35158)
[»] chr1 (3 HSPs)
chr1 (303-457)||(18153242-18153396)
chr1 (317-355)||(18901826-18901864)
chr1 (382-458)||(18901891-18901967)
[»] chr7 (10 HSPs)
chr7 (301-457)||(11283454-11283610)
chr7 (319-464)||(16483903-16484048)
chr7 (378-457)||(36017868-36017947)
chr7 (301-457)||(48187432-48187588)
chr7 (287-353)||(16931632-16931698)
chr7 (287-353)||(16937015-16937081)
chr7 (287-353)||(16955553-16955619)
chr7 (379-455)||(12528790-12528866)
chr7 (380-458)||(21268277-21268355)
chr7 (324-408)||(16421520-16421604)
[»] chr3 (2 HSPs)
chr3 (301-456)||(3224581-3224736)
chr3 (389-457)||(11034989-11035057)
[»] scaffold0655 (1 HSPs)
scaffold0655 (301-437)||(7403-7539)
[»] chr4 (3 HSPs)
chr4 (301-421)||(15418765-15418885)
chr4 (380-457)||(28654503-28654580)
chr4 (301-421)||(15425782-15425902)
[»] chr8 (3 HSPs)
chr8 (384-464)||(3897360-3897442)
chr8 (328-457)||(5537158-5537287)
chr8 (317-355)||(3897471-3897509)
[»] chr6 (3 HSPs)
chr6 (301-374)||(24540488-24540561)
chr6 (324-420)||(3509705-3509801)
chr6 (301-403)||(15277737-15277839)
[»] scaffold0003 (1 HSPs)
scaffold0003 (324-408)||(10232-10316)


Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 2038565 - 2039018
Alignment:
Q  13 aatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattt 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038565 aatatatagtatatagggtgatacgtatactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattt 2038664  T
Q  113 ttcttaactattagaaattactagaaacataaaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgt 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2038665 ttcttaactattagaaattactagaaacatagaagaggttcagattcgactaaaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgt 2038764  T
Q  213 caaaaaggaaataagtaagttgtagtgagttagtattctttagtagaatctaagccttgagtgataattagggcgtaactgagatttaaaactaagctag 312  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038765 caaaaaggaaataagtaagttgtagtgagt---tattctttagtagaatctaagccttgagtgataattagggcgtaactgagatttaaaactaagctag 2038861  T
Q  313 taaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattccatgtg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||    
T  2038862 taaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgtttttgtaaaggtaaggacatcactccacgtg 2038961  T
Q  413 cttccgtacatgtatatgtatatataaccgtgttgtgataattattttggtgatgcc 469  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  2038962 cttccgtacatgtatatgtatatataactgtgttgtgataattattttggtggtgcc 2039018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 29963588 - 29963196
Alignment:
Q  16 atatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttatttttc 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  29963588 atatagtatatagggggatacgtacactagtgccgtgaaccaatttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaatttatttt-c 29963490  T
Q  116 ttaactattagaaattactagaaacataaaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaa 215  Q
    |||||||||     ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963489 ttaactatt-----tttttagaaacatagaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaa 29963395  T
Q  216 aaaggaaataagtaagttgtagtgagttagtattctttagtagaatctaagccttgagtgataattagggcgtaactgagatttaaaactaagctagtaa 315  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  29963394 aaaggaaataagtaagttgtagtgagt---tattctttagtagaatctaa---ttgagtgataattagggcgtaactgagatttaaaactaagctagtaa 29963301  T
Q  316 atatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattccatgtgctt 415  Q
    |||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||| |||| | ||||    
T  29963300 atatttaattgtgaaggtatagatgtagt-gaacaaagaccgctgcttgaggagtttaaggattgttgttgtaaaggtaaggatatcactccacgcgctt 29963202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 35158 - 34709
Alignment:
Q  13 aatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35158 aatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattt 35059  T
Q  113 ttcttaactattagaaattactagaaacataa--aagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgt 210  Q
    | |||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058 t-cttaactattagaaattactagaaacatatggaagaggttcatgttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgt 34960  T
Q  211 gtcaaaaaggaaataagtaagttgtagtgagttagtattctttagtagaatctaagccttgagtgataattagggcgtaactgagatttaaaactaagct 310  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34959 gtcaaaaaggaaataagtaagttgtagtgagtta---ttctttagtagaatctaagccttgagtgataattagggcgtaactgagatttaaaactaacct 34863  T
Q  311 agtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattccatg 410  Q
    |||||| ||||||||||||| ||||||||||||||||||||| || | |  |||||||||||||||||||||||||||||||||||||||||| |||| |    
T  34862 agtaaacatttaattgtgaaagtatggatgtagtggaacaaaaaccgttgtttgaggagtttaaggattgttgttgtaaaggtaagggcatcactccacg 34763  T
Q  411 tgcttccgtacatgtatatgtatatataaccgtgttgtgataattattttggtg 464  Q
     | |||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34762 cgtttccgtacgtgtatatgtatatataactgtgttgtgataattattttggtg 34709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 457
Target Start/End: Original strand, 18153242 - 18153396
Alignment:
Q  303 actaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatc 402  Q
    ||||||||||||||||||||||||||||||| | ||  |||  || |||||||||   |||||||||||||| ||  ||||| || ||||||||||||||    
T  18153242 actaagctagtaaatatttaattgtgaaggtgtagagataggagagcaaagactgtcgcttgaggagtttaacgacggttgtggtgaaggtaagggcatc 18153341  T
Q  403 attccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattat 457  Q
    | |||| | |||||||||| ||||||||| |||||||  |||| |||||||||||    
T  18153342 actccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattat 18153396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 18901826 - 18901864
Alignment:
Q  317 tatttaattgtgaaggtatggatgtagtggaacaaagac 355  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  18901826 tatttaattgtgaaggtatagaggtagtggaacaaagac 18901864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 18901891 - 18901967
Alignment:
Q  382 tgttgtaaaggtaagggcatcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattatt 458  Q
    ||||| ||||||||||| ||||||||| | |||||||||| ||||| |||  |||||   |||||||||| ||||||    
T  18901891 tgttgcaaaggtaagggtatcattccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgatgattatt 18901967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 457
Target Start/End: Complemental strand, 11283610 - 11283454
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    ||||||||  ||||||||||||||||||||||||  || ||||  ||||||||||  |  |||||||||||||| ||  ||| ||   ||||||||||||    
T  11283610 aaactaagtgagtaaatatttaattgtgaaggtacagaggtaggagaacaaagaccaccgcttgaggagtttaacgacggttattacgaaggtaagggca 11283511  T
Q  401 tcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattat 457  Q
    ||| |||| | |||||||||| ||||||||| | |||||  ||||||||||||||||    
T  11283510 tcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattat 11283454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 464
Target Start/End: Original strand, 16483903 - 16484048
Alignment:
Q  319 tttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattccatgtgcttccg 418  Q
    |||||| |||||||||| || || |  || ||||||| ||| | |||||||||||| ||  |||||||  ||||||||||||||| |||| | |||||||    
T  16483903 tttaatcgtgaaggtatagaggtgggagagcaaagaccgctgcgtgaggagtttaacgacggttgttgcgaaggtaagggcatcactccacgcgcttccg 16484002  T
Q  419 tacatgtatatgtatatataaccgtgttgtgataattattttggtg 464  Q
    ||| ||||||||| ||||||   |||||||||||||||| ||||||    
T  16484003 tacgtgtatatgtgtatatatttgtgttgtgataattatcttggtg 16484048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 36017868 - 36017947
Alignment:
Q  378 ttgttgttgtaaaggtaagggcatcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattat 457  Q
    ||||| ||| |||||||||||||||| |||| |||||||||||| ||||||||| |||||||  ||||||||||||||||    
T  36017868 ttgttattgcaaaggtaagggcatcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattat 36017947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 457
Target Start/End: Complemental strand, 48187588 - 48187432
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    |||||||| || ||| ||||||||||||||||||| || ||||| |||||||||| | | |||  ||||  | ||||  |||||||||||||||||||||    
T  48187588 aaactaagttattaagtatttaattgtgaaggtatagaggtagtagaacaaagaccgttgcttatggagcatgaggaccgttgttgtaaaggtaagggca 48187489  T
Q  401 tcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattat 457  Q
    ||| |||| | |||||| ||| ||||| |||  |||||   |||||||||| |||||    
T  48187488 tcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattat 48187432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 16931698 - 16931632
Alignment:
Q  287 gtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaag 353  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||    
T  16931698 gtaagtgaaatttaaaactaaactagtaaatatttaaatgtgaaggtatagaggtagtggaacaaag 16931632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 16937081 - 16937015
Alignment:
Q  287 gtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaag 353  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||    
T  16937081 gtaagtgaaatttaaaactaaactagtaaatatttaaatgtgaaggtatagaggtagtggaacaaag 16937015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 16955619 - 16955553
Alignment:
Q  287 gtaactgagatttaaaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaag 353  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||| || ||| ||||||||||    
T  16955619 gtaagtgaaatttaaaactaaactagtaaatatttaaatgtgaaggtatagaggtaatggaacaaag 16955553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 12528866 - 12528790
Alignment:
Q  379 tgttgttgtaaaggtaagggcatcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataatt 455  Q
    |||| ||| |||||||||||||||| |||| | |||||||||| ||||||||| |||||||  ||||| ||||||||    
T  12528866 tgttattgcaaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataatt 12528790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 21268355 - 21268277
Alignment:
Q  380 gttgttgtaaaggtaagggcatcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattatt 458  Q
    ||||||| |||||||||||||||| | || | |||||||||| ||||| ||| ||||||   |||||||||| ||||||    
T  21268355 gttgttgcaaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattatt 21268277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 16421520 - 16421604
Alignment:
Q  324 ttgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattcca 408  Q
    |||||||||||| || ||||||||||||||| || | | || | | ||||||  || |||||| |||||||||||||||| ||||    
T  16421520 ttgtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactcca 16421604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 456
Target Start/End: Original strand, 3224581 - 3224736
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    ||||||||||||||||||||||||||||||||||| || ||||  || |||||||  |  |||||||||||||| ||   || ||   ||||||||||||    
T  3224581 aaactaagctagtaaatatttaattgtgaaggtatagaggtaggagagcaaagaccaccgcttgaggagtttaacgacgattattacgaaggtaagggca 3224680  T
Q  401 tcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataatta 456  Q
    ||| |||| | | |||||||||||||||||  ||||||   |||||||||||||||    
T  3224681 tcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataatta 3224736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 457
Target Start/End: Complemental strand, 11035057 - 11034989
Alignment:
Q  389 aaggtaagggcatcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattat 457  Q
    ||||||||||||||| | || | | |||||||||||||||||| |||||||  ||||||||||||||||    
T  11035057 aaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattat 11034989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 301 - 437
Target Start/End: Original strand, 7403 - 7539
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    |||||||| ||| ||| |||||||||||||||||| || ||||  || |||||||  |  ||| ||||||||||||| |||||||   ||||||||||||    
T  7403 aaactaagttagcaaacatttaattgtgaaggtatagaggtaggagagcaaagaccaccgcttaaggagtttaaggaatgttgttacgaaggtaagggca 7502  T
Q  401 tcattccatgtgcttccgtacatgtatatgtatatat 437  Q
    ||| |||| | |||||||||||||||| | |||||||    
T  7503 tcactccacgcgcttccgtacatgtatgtttatatat 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 15418765 - 15418885
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    ||||||||||||||||||||||||||||||||||| || ||||  || ||||||| ||  |||||||||||||| ||  ||| ||   ||||||||||||    
T  15418765 aaactaagctagtaaatatttaattgtgaaggtatagaggtaggagagcaaagaccgccgcttgaggagtttaacgacggttattacgaaggtaagggca 15418864  T
Q  401 tcattccatgtgcttccgtac 421  Q
    ||| ||||   ||||||||||    
T  15418865 tcactccacacgcttccgtac 15418885  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 457
Target Start/End: Complemental strand, 28654580 - 28654503
Alignment:
Q  380 gttgttgtaaaggtaagggcatcattccatgtgcttccgtacatgtatatgtatatataaccgtgttgtgataattat 457  Q
    |||||||||||||||||||||||| |||| | | |||||||| ||||||||| |||||||   |||||||||||||||    
T  28654580 gttgttgtaaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattat 28654503  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 15425782 - 15425902
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    |||||||||||| |||||||||||||||||||||| || ||||  || ||||||| ||  |||||||||||||| ||  ||| ||   ||||||||||||    
T  15425782 aaactaagctagaaaatatttaattgtgaaggtatagaggtaggagagcaaagaccgccgcttgaggagtttaacgacggttattacgaaggtaagggca 15425881  T
Q  401 tcattccatgtgcttccgtac 421  Q
    ||| ||||   ||||||||||    
T  15425882 tcactccacacgcttccgtac 15425902  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 3897442 - 3897360
Alignment:
Q  384 ttgtaaaggtaagggcatcattccatgtgcttccgtacatgtatatgtata--tataaccgtgttgtgataattattttggtg 464  Q
    ||||||||||||||| |||| |||| ||| |||||||| ||||||||||||  |||||  |||||||||||||||||||||||    
T  3897442 ttgtaaaggtaagggtatcactccacgtgtttccgtacgtgtatatgtatatatataattgtgttgtgataattattttggtg 3897360  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 457
Target Start/End: Complemental strand, 5537287 - 5537158
Alignment:
Q  328 gaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattccatgtgcttccgtacatgtat 427  Q
    |||||||| || ||||||||||||||| || | | || | | ||||||  || |||||| ||||||||  |||||| |||| | |||||||||| |||||    
T  5537287 gaaggtatagacgtagtggaacaaagaatgattcctgggaattttaagagttcttgttgcaaaggtaacagcatcactccacgcgcttccgtacgtgtat 5537188  T
Q  428 atgtatatataaccgtgttgtgataattat 457  Q
    |||| |||||||  |||| |||||||||||    
T  5537187 atgtgtatataattgtgtagtgataattat 5537158  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 3897509 - 3897471
Alignment:
Q  317 tatttaattgtgaaggtatggatgtagtggaacaaagac 355  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  3897509 tatttaattgtgaaggtattgatgttgtggaacaaagac 3897471  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 24540488 - 24540561
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaa 374  Q
    ||||||||||||||||||||||||||||||||||| || ||||  || ||||||| ||  ||||||||||||||    
T  24540488 aaactaagctagtaaatatttaattgtgaaggtatagaggtaggagagcaaagaccgccgcttgaggagtttaa 24540561  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 420
Target Start/End: Original strand, 3509705 - 3509801
Alignment:
Q  324 ttgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattccatgtgcttccgta 420  Q
    |||||||||||| || ||||||||||||||| |||| | || | | ||||||  || ||| || ||||||||||||||||||||||| |||||||||    
T  3509705 ttgtgaaggtatagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttggtgcaaaggtaagggcatcattccatgcgcttccgta 3509801  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 15277737 - 15277839
Alignment:
Q  301 aaactaagctagtaaatatttaattgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggca 400  Q
    ||||| || ||| ||| |||||| ||||||||||| || | ||  || | ||||| ||| ||||||||||||||||||||||||| | ||||||||||||    
T  15277737 aaactgagttagcaaacatttaactgtgaaggtatagagggaggagagcgaagaccgctgcttgaggagtttaaggattgttgttatgaaggtaagggca 15277836  T
Q  401 tca 403  Q
    |||    
T  15277837 tca 15277839  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 10232 - 10316
Alignment:
Q  324 ttgtgaaggtatggatgtagtggaacaaagactgctccttgaggagtttaaggattgttgttgtaaaggtaagggcatcattcca 408  Q
    |||||||||||| || ||||||||||||||| || | | || | | ||||||  || |||||| |||||||||||||||| ||||    
T  10232 ttgtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactcca 10316  T

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