View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7571_high_2 (Length: 369)
Name: NF7571_high_2
Description: NF7571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7571_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 39360727 - 39361087
Alignment:
| Q |
1 |
ttctgtgatggagttcaatggtggctccaatgagaatgaattcggttattttggtggtgttgtgaatgaacatgaaaaagagaaagagaaagtggtagaa |
100 |
Q |
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| T |
39360727 |
ttctgtgatggagttcaatggtggttccaatcagaatgaattcggttattttggtggtgttgtgaatgaacatgaaaaagagaaagagaaagtggtagaa |
39360826 |
T |
|
| Q |
101 |
caagaaacacatgttgttgaacaagctgaagctgaattagcaaaaaatgaggtacaagaattgtctgatgaattgttggcatacgaggattacatgaagt |
200 |
Q |
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| T |
39360827 |
caagaaacacatgttgttgaacaagctgaagctgaattagcaaaaaatgaggtacaagaattgtctgatgaattgttggcatacgaggattacatgaagt |
39360926 |
T |
|
| Q |
201 |
tttatcagatttactatgatggacaatcagtgatgccacctaataatgttcaggaacatgtggttggagatttatggagctttgattgatggtaacaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39360927 |
tttatcagatttactatgatggacaatcagtgatgccacctaataatgttcaggaacatgtggttggagatttatggagctttgattgatggtaacaata |
39361026 |
T |
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| Q |
301 |
actgtttttcatgcttcggtttcttctgtgaagcttctgtgaagacagaatttttcccatt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39361027 |
actgtttttcatgcttcggtttcttctgtgaagcttctgtgaagacagaatttttcccatt |
39361087 |
T |
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