View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7571_low_3 (Length: 361)
Name: NF7571_low_3
Description: NF7571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7571_low_3 |
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| [»] scaffold0810 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 9785511 - 9785369
Alignment:
| Q |
6 |
acaacttttagcttaaaaatcactttgaagttnnnnnnnntgacacttaccaaacaacttttagctttgcttctaaagcacttattgttagctttggctt |
105 |
Q |
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| T |
9785511 |
acaacttttagcttaaaaatcactttgaagttaaaaaaaatgacacttaccaaacaacttttagctttgcttctaaagcacttattattagctttggctt |
9785412 |
T |
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| Q |
106 |
ccaaaaagcttataagccctaaaaaagcttggccaaacatagc |
148 |
Q |
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| T |
9785411 |
ccaaaaagcttataagccctaaaaaagcttggccaaacatagc |
9785369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 3592275 - 3592421
Alignment:
| Q |
6 |
acaacttttagcttaaaaatcactttgaagttnnnnnnnntgacacttaccaaacaacttttagctttgcttctaaagcacttattgttagctttggctt |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3592275 |
acaacttttagcttaaaaatcactttgaagttaaaaaaaaagacacttaccaaacaacttttagctttgcttctaaagcacttattgttaactttggctt |
3592374 |
T |
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| Q |
106 |
ccaaaaagcttataagccctaaaaaagcttggccaaacatagcctta |
152 |
Q |
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| T |
3592375 |
ccacaaagcttataagccctaaaaaagcttggccaaacatagcctta |
3592421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 10490514 - 10490365
Alignment:
| Q |
6 |
acaacttttagcttaaaaatcactttgaagttnnnnnnnn-tgacacttaccaaacaacttttagctttgcttctaaagcacttattgttagctttggct |
104 |
Q |
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| T |
10490514 |
acaacttttagcttaaaaaacactttgaagttaaaaaaaaatgacaattaccaaacaacttttagctttgcttctaaagcacttattgttagctttggct |
10490415 |
T |
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| Q |
105 |
tccaaaaagcttataagccctaaaaaagcttggccaaacatagccttagt |
154 |
Q |
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| T |
10490414 |
tccaaaaagcttataagccctaaaaaagcttggccaaacatagccttagt |
10490365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 38316589 - 38316509
Alignment:
| Q |
79 |
taaagcacttattgttagctttggcttccaaaaagcttataagccct-aaaaaagcttggccaaacatagccttagtcttt |
158 |
Q |
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| T |
38316589 |
taaagcacttattgttagctttggctttcaaatagtctataaatcctaaaaaaagtttggccaaacatagctatagtcttt |
38316509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 25302196 - 25302268
Alignment:
| Q |
259 |
catttgagtttttctacaaaagtttttaatgaaacaattgttgttggtatgttggatt-tttaatttgatttg |
330 |
Q |
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| T |
25302196 |
catttgagtttttctagaaaagtttttaatgaaacaattgttgttggtatgttggattgtttaatttgatttg |
25302268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 4667 - 4714
Alignment:
| Q |
52 |
ttaccaaacaacttttagctttgcttctaaagcacttattgttagcttt |
100 |
Q |
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| T |
4667 |
ttaccaaacaacttt-agctttacttctaaagcacttatttttaacttt |
4714 |
T |
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