View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7571_low_5 (Length: 278)
Name: NF7571_low_5
Description: NF7571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7571_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 52328541 - 52328292
Alignment:
| Q |
23 |
tacctttgatgatatctctgtagaaatcaagggattcgaagagctgagatggagtcttgcccttccacttaagagtgagtgatgcgacagccttttcttc |
122 |
Q |
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| T |
52328541 |
tacctttgatgatatctctgtagaaatcaagggattcgaagagctgagacggagtcttgcccttccacttaagagtgagtgatgctacagccttttcttc |
52328442 |
T |
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| Q |
123 |
caagtaaactcctaatccagtgaacttcacaaactctccatcaatatctaaccctctcacccctacatatataccaagaagacctaataaatcttacttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52328441 |
caagtaaactcctaatccagtgaacttcacaaactctccatcaacatctaaccctctcacccctacatatataccaagaagacctgataaatcttacttt |
52328342 |
T |
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| Q |
223 |
ctcgagtttggactaacacatagtagcaagtgattgaactaaacaccata |
272 |
Q |
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| T |
52328341 |
catgagtttggactaacacatagtagcaagtgattgaactaaacaccata |
52328292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 52332467 - 52332293
Alignment:
| Q |
18 |
gttgctacctttgatgatatctctgtagaaatcaagggattcgaagagctgagatggagtcttgcccttccacttaagagtgagtgatgcgacagccttt |
117 |
Q |
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| T |
52332467 |
gttgttacctttgatgatatctcggtagaattcaagggattcaaagagctgagatggagtcttgcccttccacttaggagtgagtgatgctacagctttt |
52332368 |
T |
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| Q |
118 |
tcttccaagtaaactcctaatccagtgaacttcacaaactctccatcaatatct-aaccctctcacccctacata |
191 |
Q |
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| T |
52332367 |
tcttccaaataaattcctattccagtgaacttcacaaattctccatcaatatctaaaccccctcacccctacata |
52332293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 52324868 - 52324696
Alignment:
| Q |
18 |
gttgctacctttgatgatatctctgtagaaatcaagggattcgaagagctgagatggagtcttgcccttccacttaagagtgagtgatgcgacagccttt |
117 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| ||| |
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| T |
52324868 |
gttgctacctttgatgatatctcgatagaattcaagggattcaaagagctgagatggagttttgcctttccacttaggagtgagtgatgctacagctttt |
52324769 |
T |
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| Q |
118 |
tcttccaagtaaactcctaatccagtgaacttcacaaactctccatcaatatctaaccctctcacccctacat |
190 |
Q |
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| T |
52324768 |
tcttccaaataaattcctattccagtgaacttcacaaattctccatcaatatctaaccccctcacccctacat |
52324696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 9173737 - 9173608
Alignment:
| Q |
62 |
agagctgagatggagtcttgcccttccacttaagagtgagtgatgcgacagccttttcttccaagtaaactcctaatccagtgaacttcacaaactctcc |
161 |
Q |
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|||| ||||||| ||| || |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||| ||||| |
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| T |
9173737 |
agagttgagatgaagttttacccttccaattaagagtgagtgatgctacagctttttcttccaaataaactcctattccagtgaacttcacaaattctcc |
9173638 |
T |
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| Q |
162 |
atcaatatctaaccctctcacccctacata |
191 |
Q |
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| T |
9173637 |
atcaatatctaaccccctcacccttacata |
9173608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9173808 - 9173776
Alignment:
| Q |
18 |
gttgctacctttgatgatatctctgtagaaatc |
50 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
9173808 |
gttgttacctttgatgatatctctgtagaaatc |
9173776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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