View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7572_high_1 (Length: 512)

Name: NF7572_high_1
Description: NF7572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7572_high_1
NF7572_high_1
[»] chr2 (24 HSPs)
chr2 (12-499)||(27148692-27149182)
chr2 (60-192)||(27149432-27149569)
chr2 (83-192)||(2869832-2869943)
chr2 (60-192)||(23078609-23078742)
chr2 (51-192)||(8039877-8040019)
chr2 (51-192)||(10445582-10445725)
chr2 (51-192)||(35397332-35397470)
chr2 (51-192)||(34682472-34682614)
chr2 (76-192)||(31055887-31056001)
chr2 (76-192)||(33528759-33528873)
chr2 (76-192)||(10707389-10707505)
chr2 (60-184)||(34388686-34388810)
chr2 (51-192)||(20522038-20522179)
chr2 (51-103)||(21629769-21629822)
chr2 (75-192)||(28259315-28259430)
chr2 (60-142)||(36757947-36758031)
chr2 (60-142)||(42039855-42039939)
chr2 (51-142)||(16388266-16388358)
chr2 (58-121)||(16940416-16940481)
chr2 (58-121)||(17011081-17011146)
chr2 (51-102)||(40014746-40014799)
chr2 (82-192)||(14699132-14699244)
chr2 (76-192)||(33117981-33118095)
chr2 (87-186)||(15904031-15904133)
[»] chr7 (14 HSPs)
chr7 (319-499)||(15486191-15486374)
chr7 (51-192)||(3047070-3047215)
chr7 (51-192)||(28617363-28617505)
chr7 (51-192)||(9235693-9235836)
chr7 (51-192)||(4796805-4796949)
chr7 (51-192)||(20283907-20284048)
chr7 (51-192)||(23403151-23403292)
chr7 (51-192)||(46516448-46516590)
chr7 (51-142)||(5817461-5817552)
chr7 (51-192)||(29159620-29159762)
chr7 (51-142)||(2580206-2580299)
chr7 (58-192)||(49091487-49091621)
chr7 (40-186)||(9190152-9190298)
chr7 (60-142)||(21988733-21988817)
[»] chr8 (6 HSPs)
chr8 (58-193)||(5990698-5990829)
chr8 (51-181)||(7493210-7493345)
chr8 (58-192)||(9765958-9766092)
chr8 (51-192)||(6127036-6127179)
chr8 (58-186)||(5702627-5702755)
chr8 (51-103)||(23799803-23799856)
[»] chr5 (9 HSPs)
chr5 (51-195)||(42127545-42127688)
chr5 (51-192)||(11181970-11182113)
chr5 (60-186)||(14520056-14520182)
chr5 (51-192)||(19588564-19588705)
chr5 (58-192)||(28832085-28832218)
chr5 (60-187)||(34842434-34842558)
chr5 (51-192)||(3880120-3880259)
chr5 (58-101)||(10281687-10281732)
chr5 (59-142)||(28537445-28537530)
[»] chr4 (15 HSPs)
chr4 (51-195)||(1983433-1983577)
chr4 (51-192)||(25862160-25862301)
chr4 (51-185)||(5112059-5112194)
chr4 (58-192)||(54867007-54867143)
chr4 (60-192)||(16624147-16624279)
chr4 (60-195)||(5147504-5147639)
chr4 (76-192)||(5269329-5269446)
chr4 (51-192)||(10047197-10047338)
chr4 (127-192)||(38152576-38152641)
chr4 (60-192)||(16630818-16630950)
chr4 (112-192)||(37781743-37781822)
chr4 (76-195)||(5143104-5143221)
chr4 (75-142)||(5396860-5396927)
chr4 (51-195)||(39245811-39245956)
chr4 (51-96)||(24333628-24333675)
[»] chr1 (12 HSPs)
chr1 (65-142)||(17345704-17345782)
chr1 (51-192)||(775490-775631)
chr1 (75-182)||(32889282-32889387)
chr1 (76-192)||(40816870-40816985)
chr1 (58-191)||(9023971-9024102)
chr1 (60-192)||(29651637-29651770)
chr1 (51-121)||(13604830-13604902)
chr1 (128-195)||(19072823-19072889)
chr1 (128-195)||(19120713-19120779)
chr1 (60-186)||(21536714-21536839)
chr1 (51-96)||(9476080-9476127)
chr1 (61-142)||(26645083-26645166)
[»] chr6 (11 HSPs)
chr6 (51-192)||(31979331-31979472)
chr6 (48-142)||(27165519-27165614)
chr6 (59-192)||(22963526-22963659)
chr6 (59-192)||(23824734-23824867)
chr6 (51-186)||(5572740-5572875)
chr6 (75-142)||(21355882-21355949)
chr6 (80-192)||(10077303-10077413)
chr6 (76-192)||(5017606-5017724)
chr6 (51-138)||(31077146-31077233)
chr6 (58-103)||(31086687-31086734)
chr6 (60-186)||(31936414-31936540)
[»] chr3 (14 HSPs)
chr3 (63-147)||(4387102-4387186)
chr3 (60-192)||(27038117-27038249)
chr3 (56-192)||(40592911-40593050)
chr3 (60-192)||(30709919-30710051)
chr3 (51-195)||(48438032-48438176)
chr3 (51-103)||(18554502-18554556)
chr3 (48-102)||(4387249-4387303)
chr3 (60-186)||(36028932-36029058)
chr3 (60-192)||(27026772-27026904)
chr3 (58-142)||(1417665-1417751)
chr3 (51-103)||(3323778-3323832)
chr3 (79-192)||(8370615-8370726)
chr3 (75-196)||(35925326-35925445)
chr3 (127-195)||(3328481-3328547)
[»] scaffold0184 (1 HSPs)
scaffold0184 (60-192)||(29620-29760)
[»] scaffold0078 (2 HSPs)
scaffold0078 (60-192)||(43084-43224)
scaffold0078 (60-187)||(23357-23483)
[»] scaffold0148 (1 HSPs)
scaffold0148 (52-192)||(10546-10688)
[»] scaffold0087 (2 HSPs)
scaffold0087 (75-186)||(44105-44212)
scaffold0087 (75-142)||(37018-37085)
[»] scaffold0006 (1 HSPs)
scaffold0006 (51-121)||(133487-133559)
[»] scaffold1805 (1 HSPs)
scaffold1805 (75-142)||(1252-1319)
[»] scaffold0036 (1 HSPs)
scaffold0036 (60-186)||(85512-85637)
[»] scaffold0098 (1 HSPs)
scaffold0098 (62-142)||(45085-45166)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 499
Target Start/End: Complemental strand, 27149182 - 27148692
Alignment:
Q  12 cacaaaaccatatgaagtctgtcatatatatctgtggttaattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcag 111  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  27149182 cacaacaccatatgaagtctttcatatatatctgttgttaattcggacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgataatcaa 27149083  T
Q  112 tgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaacaccttgagagtgtagta 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  27149082 tgagtaaagtagcatcaagcaacaacaacaataacatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaacaccataagagtgtagta 27148983  T
Q  212 gtacaaagaaatatgacaggattgctcaatgcctccactatttccaacaactaatggattttctaaaannnnnnnnnnnnggaaatgtcccctgtaaccg 311  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||             |||||||  ||||||||||    
T  27148982 gtacaaagaaatacgacaggattgctcaatgcctccactatttccggcaactaatggattttctaaaactctctctctctagaaatgtgacctgtaaccg 27148883  T
Q  312 nnnnnnncggcaacctaatctttctccggccaagctccgacgttgctccaatcacctctttcctttagttttcattgccgtttcacacccttctacggtg 411  Q
           ||||||||| |||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||||||    
T  27148882 tttttttcggcaacctcatctttctccagccaagctccggcattgctccgatcacctctttccttcagttttcatggtcatttcacacccttctacggtg 27148783  T
Q  412 gttgattcatcatctttaccctccagagctgataattctctt---ctccgtttccacactctttgaaactattacaattgacgaggttcat 499  Q
    | ||||||||||||| ||||||||||||||| ||||||||||   |||||||||||||||||||| ||||||| |||||||||||||||||    
T  27148782 gctgattcatcatctctaccctccagagctggtaattctcttctcctccgtttccacactctttggaactattgcaattgacgaggttcat 27148692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 27149569 - 27149432
Alignment:
Q  60 aaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatat-----tcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatct 154  Q
    |||||||||||||| ||||||||||||||| ||||||| || | | ||     ||| ||||||||||||| ||||| ||||| ||||| ||||||| |||    
T  27149569 aaaatcacaccaatgaaacaaagatgtgtgtagcaaaggaatttaaatggtaatcaatgagtaaagtagcctcaagtaacaataacaacaaaatagttct 27149470  T
Q  155 aaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    |||||||| |||||||||| |||| || ||||||||||    
T  27149469 aaatctatgtgtaaagcaataccataaacatattcaaa 27149432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 2869943 - 2869832
Alignment:
Q  83 atgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataa--aatagatctaaatctatttgtaaagcaacaccaca 180  Q
    |||| |||||||||| ||||  |  ||| |||||||||||||||||| |||||||||||| ||  |||||| |||||||||  |||| |||||||||| |    
T  2869943 atgtttggagcaaaggaagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccata 2869844  T
Q  181 agcatattcaaa 192  Q
    ||||||||||||    
T  2869843 agcatattcaaa 2869832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 23078742 - 23078609
Alignment:
Q  60 aaaatcacaccaatcaaa--caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| |||  |||||||||||||||||||| ||||| || ||| || |||||||  |  |||||||||||||||| |||| | | ||| |    
T  23078742 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaaacatacctaga 23078644  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  |||| |||||||||||||||||| |||||    
T  23078643 tctaagtgtagagcaacaccacaagcataatcaaa 23078609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 8039877 - 8040019
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||||| |||||||||||||||| ||  |||||||||||||||||||| | ||||| || ||| |   ||||||  | |||||||||||||||||  |||    
T  8039877 aattcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaacaa--aaa 8039974  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     ||| |||||||||  |||| |||||||||||||||||| |||||    
T  8039975 cagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 8040019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 10445725 - 10445582
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaa--caaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||||| |||||||||||||||| |||  ||||||||||||||||||| | ||||| || ||| ||  ||||||  |  |||||||||||||||| ||||    
T  10445725 aattcggacaaaatcacaccaatgaaaaacaaagatgtgtggagcaaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaa-aaaa 10445627  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     ||| |||||||||  |||| ||||| |||||||||||| |||||    
T  10445626 cagacctaaatctaagtgtagagcaaaaccacaagcataatcaaa 10445582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 35397332 - 35397470
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatag 150  Q
    |||||| |||||| ||||||||| ||||||||||||| |||||| || ||||  || ||| ||||| || |  | |||||||||||||||   ||||||     
T  35397332 aattcggacaaaaacacaccaatgaaacaaagatgtgcggagcagaggaagtagtaatcaatgagtgaaatgacctcaagcaacaacaac---aaaatat 35397428  T
Q  151 atctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    | |||||||||| || | ||||| |||||||||||| |||||    
T  35397429 acctaaatctatgtgcagagcaaaaccacaagcataatcaaa 35397470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 34682614 - 34682472
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||||| |||||| ||||||||| ||  |||||||||||||||||||| ||||||| || ||| |   ||||||  |  ||||||||||||||||  |||    
T  34682614 aattcgtacaaaaccacaccaatgaataacaaagatgtgtggagcaaaagaaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa--aaa 34682517  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     ||| |||||||||  |||| |||||||||||||||||| |||||    
T  34682516 cagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 34682472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 31055887 - 31056001
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaaca 175  Q
    |||||||||||||||||||||| ||||| || ||| |   ||||||  |  ||||||||||||||||  ||| ||| |||||||||  |||| |||||||    
T  31055887 aacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaaca 31055984  T
Q  176 ccacaagcatattcaaa 192  Q
    ||||||||||| |||||    
T  31055985 ccacaagcataatcaaa 31056001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 33528873 - 33528759
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaaca 175  Q
    |||||||||||||||||||||| ||||| || ||| ||  ||||||  |  |||||||||||||||  |||| ||| ||| |||||  |||| |||||||    
T  33528873 aacaaagatgtgtggagcaaaggaagtggtaatcaatggataaagtgtccccaagcaacaacaaca--aaaacagacctagatctaaatgtagagcaaca 33528776  T
Q  176 ccacaagcatattcaaa 192  Q
    ||||||||||| |||||    
T  33528775 ccacaagcataatcaaa 33528759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 10707505 - 10707389
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaaca 175  Q
    |||||||||||||||||||||  ||||| || ||| || |||||||  |  |||||||||||||||| |||||| | ||| |||||  |||| |||||||    
T  10707505 aacaaagatgtgtggagcaaaagaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaagaaaatatacctagatctaagtgtagagcaaca 10707406  T
Q  176 ccacaagcatattcaaa 192  Q
    |  |||||||| |||||    
T  10707405 ctgcaagcataatcaaa 10707389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 34388686 - 34388810
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  || |||||||||||||||||| ||||| || ||| |  |||||||  | ||||||||||||||||  |||| ||| ||| |    
T  34388686 aaaatcacaccaataaataacgaagatgtgtggagcaaaggaagtggtaatcaatatgtaaagtgtcttcaagcaacaacaaca--aaaacagacctaga 34388783  T
Q  158 tctatttgtaaagcaacaccacaagca 184  Q
    ||||  |||| ||||||||||||||||    
T  34388784 tctaagtgtagagcaacaccacaagca 34388810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 20522038 - 20522179
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  |||||||||||||||| |||| ||||| || ||| ||  ||||||  |  ||||||| |||||||| ||||     
T  20522038 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagaaaaggaagtggtaatcaatggataaagtgtctccaagcaaaaacaacaaaaaaag 20522137  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    | ||  | |||||  |||| |||||||||||||||||| |||||    
T  20522138 acat--agatctaagtgtagagcaacaccacaagcataatcaaa 20522179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 21629769 - 21629822
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaa-caaagatgtgtggagcaaagaaagtg 103  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||| |||||    
T  21629769 aattcggacaaaatcacaccaatgaaaacaaagatgtgtggagcaaaggaagtg 21629822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 28259430 - 28259315
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaac 174  Q
    ||||||||||||||||||||||| |||| ||| ||| || |||||||  |  |||||||||| ||||| |||| ||| || | ||||  |||| ||||||    
T  28259430 aaacaaagatgtgtggagcaaaggaagtaataatcaatgtgtaaagtgtctccaagcaacaataacaaaaaaacagacct-agtcta-gtgtagagcaac 28259333  T
Q  175 accacaagcatattcaaa 192  Q
    ||||||||||||| ||||    
T  28259332 accacaagcatatacaaa 28259315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 36758031 - 36757947
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| || |||||||  |  ||||||||||||||||    
T  36758031 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa 36757947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 42039939 - 42039855
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| || |||||||  |  ||||||||||||||||    
T  42039939 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa 42039855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 16388266 - 16388358
Alignment:
Q  51 aattcgaacaaa--atcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||||||  |||||||| || ||||  ||||||||||||||||||||||  || ||| ||| ||||||||  ||||||| |||||||||    
T  16388266 aattcgaacaaataatcacaccgat-aaacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaa 16388358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 16940481 - 16940416
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagt 121  Q
    |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| ||| ||||||    
T  16940481 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgaataaagt 16940416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 17011146 - 17011081
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagt 121  Q
    |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| ||| ||||||    
T  17011146 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgaataaagt 17011081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 40014746 - 40014799
Alignment:
Q  51 aattcgaacaaaatcacaccaat--caaacaaagatgtgtggagcaaagaaagt 102  Q
    |||||| ||||||||||||||||  ||||||||||||| |||||||||| ||||    
T  40014746 aattcggacaaaatcacaccaatgacaaacaaagatgtatggagcaaaggaagt 40014799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 14699244 - 14699132
Alignment:
Q  82 gatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat--agatctaaatctatttgtaaagcaacaccac 179  Q
    |||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||||| ||||   ||| |||||||||  |||| |||||||||||    
T  14699244 gatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaacaaaaagcagacctaaatctaagtgtagagcaacaccac 14699145  T
Q  180 aagcatattcaaa 192  Q
    ||||||| |||||    
T  14699144 aagcataatcaaa 14699132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 33117981 - 33118095
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaaca 175  Q
    |||||||||||||||| ||||| ||||| || ||| |   ||||||  | |||| || |||||||||  ||| ||| |||||||||  |||| |||||||    
T  33117981 aacaaagatgtgtggatcaaaggaagtggtaatcaatagataaagtgtcttcaaacatcaacaacaa--aaacagacctaaatctaagtgtagagcaaca 33118078  T
Q  176 ccacaagcatattcaaa 192  Q
    ||||||||||| |||||    
T  33118079 ccacaagcataatcaaa 33118095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 15904133 - 15904031
Alignment:
Q  87 gtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataa---aatagatctaaatctatttgtaaagcaacaccacaagc 183  Q
    |||||||||||  |||| || ||| |||| |||||| | ||||||||||||||||| ||   || || |||||| |||| |||||| || ||||||||||    
T  15904133 gtggagcaaagggagtggtaatcaatgagcaaagtatcctcaagcaacaacaacaacaacgaaacagttctaaaactatgtgtaaaacatcaccacaagc 15904034  T
Q  184 ata 186  Q
    |||    
T  15904033 ata 15904031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 319 - 499
Target Start/End: Complemental strand, 15486374 - 15486191
Alignment:
Q  319 cggcaacctaatctttctccggccaagctccgacgttgctccaatcacctctttcctttagttttcattgccgtttcacacccttctacggtggttgatt 418  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||  ||| ||||||||||||||||||||  |||||    
T  15486374 cggcaacctaatctttctccggccaagctccggcgttgctctgatcacctctttccttcagttttcacggccatttcacacccttctacggtgactgatt 15486275  T
Q  419 catcatctttaccctccagagctgataattctctt---ctccgtttccacactctttgaaactattacaattgacgaggttcat 499  Q
    |||||||| |||||||||||||||||  |||||||   |||||||||||||||||||| |||| |||||||| |||||||||||    
T  15486274 catcatctctaccctccagagctgattcttctcttctcctccgtttccacactctttggaactgttacaattcacgaggttcat 15486191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 3047070 - 3047215
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaa-caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaat---aaa 146  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||  | ||||||||||||||||||   |||    
T  3047070 aattcggacaaaatcacaccaatgaaaacaaagatgtgtggagcaaagaaagtgataatcaatgagtaaagtgtcctcaagcaacaacaacaataacaaa 3047169  T
Q  147 atagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    |||| |||||| || | ||||||||||||||||||||||| |||||    
T  3047170 atagttctaaaactgtgtgtaaagcaacaccacaagcataatcaaa 3047215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 28617505 - 28617363
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatag 150  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| ||||| ||||| |||||||    
T  28617505 aattcggacaaaatcacattaatcaaacaaagatgtgtggagcaaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaatag 28617406  T
Q  151 atctaaatctatttgt-aaagcaacaccacaagcatattcaaa 192  Q
    | |||| |||    || ||||||||||||||||||||||||||    
T  28617405 acctaagtcttagagtaaaagcaacaccacaagcatattcaaa 28617363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 9235836 - 9235693
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| ||  ||||||  |  |||||||||||||||| ||||     
T  9235836 aattcggacaaaatcacaccaataaataacaaagatgtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaaaaaaac 9235737  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| |||||||||||||||||| |||||    
T  9235736 agacctaaatctaaatgtagagcaacaccacaagcataatcaaa 9235693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 4796949 - 4796805
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaac-aataaaa 147  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||| || ||||    
T  4796949 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtttctccaagcaacaacaacaaaaaaaa 4796850  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     ||| |||||||||  |||| |||||||||||||||||| |||||    
T  4796849 cagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 4796805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 20283907 - 20284048
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| ||||||||||||| || ||  ||||||||||||||||||||  |||||||| ||| ||  ||||||  |  |||| |||||||||||  |||     
T  20283907 aattcggacaaaatcacacctatgaataacaaagatgtgtggagcaaaagaagtgataatcaatggataaagtgtctccaagaaacaacaacaa--aaac 20284004  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| |||||||||||||||||| |||||    
T  20284005 agacctaaatctaagtgtagagcaacaccacaagcataatcaaa 20284048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 23403292 - 23403151
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| ||||||||| |||||| ||  ||||||||||||||||||||| |||||||| ||| ||  ||||||     |||||||||||||||  ||||     
T  23403292 aattcggacaaaatcataccaatgaataacaaagatgtgtggagcaaaggaagtgataatcaatggataaagtgtttccaagcaacaacaaca--aaaac 23403195  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||| ||  |||| |||||||||||||||||| |||||    
T  23403194 agacctaaatgtaagtgtagagcaacaccacaagcataatcaaa 23403151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 46516590 - 46516448
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  ||| |||||||||||| ||||     
T  46516590 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaaacaacaacaacaa-aaaac 46516492  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    |||  ||||||||  ||||||||||||||| ||||||| |||||    
T  46516491 agacttaaatctaagtgtaaagcaacaccaaaagcataatcaaa 46516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 5817552 - 5817461
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||| ||||||||||| |||| ||||||||||||||| ||||||| ||||  || ||| ||   ||||||||||||| ||||||||||||    
T  5817552 aattcgtacaaaatcacatcaataaaacaaagatgtgtgaagcaaagtaagtattaatcaatggacaaagtagcatcaaacaacaacaacaa 5817461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 29159620 - 29159762
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaaga-aagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||||| |||||||||||||||| ||  |||||||||||||||||||||  ||||| || ||| |   ||||||  |  ||||||||||||||||  |||    
T  29159620 aattcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaagggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa--aaa 29159717  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     ||| |||||||||  |||| |||||||||||||||||| |||||    
T  29159718 cagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 29159762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 2580206 - 2580299
Alignment:
Q  51 aattcgaacaaaatcacaccaatc-aaacaaagatgtgtggagc-aaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||| ||||||||||||||||  ||||||||||||||||||| |||| ||||| || ||| || |||||||  | |||||||||||||||||    
T  2580206 aattcggacaaaatcacaccaatgtaaacaaagatgtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa 2580299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 49091487 - 49091621
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatcta 155  Q
    |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||||  |||| ||| |||    
T  49091487 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaaca--aaaacagaccta 49091584  T
Q  156 aatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     || ||  |||| |||||||||||||||||| |||||    
T  49091585 gatttaagtgtagagcaacaccacaagcataatcaaa 49091621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 9190298 - 9190152
Alignment:
Q  40 tatctgtggttaattcgaacaaaatcacaccaatcaaa--caaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaa 136  Q
    ||||||| || ||||||  ||||||||||||||| |||  ||||||||||||||||||| | ||||| || ||| || |||||||  |  ||||||||||    
T  9190298 tatctgttgtgaattcggtcaaaatcacaccaatgaaaaacaaagatgtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaa 9190199  T
Q  137 caacaataaaatagatctaaatctatttgtaaagcaacaccacaagcata 186  Q
    |||||| | ||   | ||| |||||  |||| ||||||||||||||||||    
T  9190198 caacaaaacaa---acctagatctaagtgtagagcaacaccacaagcata 9190152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 21988733 - 21988817
Alignment:
Q  60 aaaatcacaccaatcaaacaaa--gatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||||||||||| ||| | |  |||||||||||||||| ||||| || ||| || |||||||  || ||||||||||||||||    
T  21988733 aaaatcacaccaatgaaaaataatgatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtcaccaagcaacaacaacaa 21988817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 5990829 - 5990698
Alignment:
Q  58 acaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    ||||||||||| |||| ||||||||||||| ||||||||| ||||  || ||| ||  |||||||||||||||||||||||||    ||||||| |||||    
T  5990829 acaaaatcacatcaataaaacaaagatgtgcggagcaaaggaagtagtaatcaatggataaagtagcatcaagcaacaacaac----aaatagacctaaa 5990734  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaaa 193  Q
    ||||  |||| | ||| |||||||||||||||||||    
T  5990733 tctaagtgtagaacaaaaccacaagcatattcaaaa 5990698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 7493345 - 7493210
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaata-----a 145  Q
    |||||| |||||||||||||||| |||| | |||||||||||||||| ||||  || ||| || |||||||||  ||||||| || |||||| |     |    
T  7493345 aattcggacaaaatcacaccaataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagcagcagcaacaacaacaaca 7493246  T
Q  146 aatagatctaaatctatttgtaaagcaacaccacaa 181  Q
    ||||||||||||||||  |||| |||||||||||||    
T  7493245 aatagatctaaatctaagtgtagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 9766092 - 9765958
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatcta 155  Q
    |||||||||||||||| ||  ||||||||||||||||||||| |||||||| ||| |   ||||||  |  |||||||||||||||  |||| | | |||    
T  9766092 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtgataatcaatagataaagtgtctccaagcaacaacaaca--aaaacaaaccta 9765995  T
Q  156 aatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||||  |||| |||||||||||||||||| |||||    
T  9765994 aatctaagtgtagagcaacaccacaagcataatcaaa 9765958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 6127036 - 6127179
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||||| |||||||||||||||| ||  |||||||||||||||||||| | ||||| || ||| |   | ||||  |  |||||||||||||||| ||||    
T  6127036 aattcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaaaggaagtggtaatcaatagattaagtgtctccaagcaacaacaacaa-aaaa 6127134  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     |||| ||||| ||  |||| |||||||||||||||||| |||||    
T  6127135 cagatataaatttaagtgtagagcaacaccacaagcataatcaaa 6127179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 5702755 - 5702627
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatcta 155  Q
    |||||||||||||||| ||  ||||||||||||||||||||  ||||| || ||| ||| ||||||  |  | |||||||||||||  |||| ||| |||    
T  5702755 acaaaatcacaccaatgaataacaaagatgtgtggagcaaatgaagtggtaatcaatgaataaagtgtctcctagcaacaacaaca--aaaacagaccta 5702658  T
Q  156 aatctatttgtaaagcaacaccacaagcata 186  Q
     |||||  |||| |||| |||||||||||||    
T  5702657 gatctaagtgtagagcatcaccacaagcata 5702627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 23799856 - 23799803
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaacaaag-atgtgtggagcaaagaaagtg 103  Q
    |||||| |||||||||||||||| ||| |||  |||||||||||||||||||||    
T  23799856 aattcgtacaaaatcacaccaatgaaaaaaaatatgtgtggagcaaagaaagtg 23799803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 42127688 - 42127545
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||| ||| ||  ||||||||||||||||||||||||||| || ||| ||  ||||||  |  ||||||||||||||   ||||     
T  42127688 aattcggacaaaatcacactaatgaataacaaagatgtgtggagcaaagaaagtggtaatcaatggataaagtgtctccaagcaacaacaac---aaaac 42127592  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    |||  |||||||| ||||| |||||||||||||||||| ||||||||    
T  42127591 agacttaaatctaattgtagagcaacaccacaagcataatcaaaaca 42127545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 11182113 - 11181970
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||||| ||||     
T  11182113 aatttgaacaaaatcacaccaatgaataacaaagatgtgtggagcaaagtaagtggtaatcaatagataaagtgtctccaagcaacaacaacaaaaaaac 11182014  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    |||  ||||||||  |||| ||||| |||||||||||| |||||    
T  11182013 agacttaaatctaagtgtagagcaataccacaagcataatcaaa 11181970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 14520056 - 14520182
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| || |||||||  |  |||||||||||||||  |||| ||| ||| |    
T  14520056 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaaca--aaaacagacctaga 14520153  T
Q  158 tctatttgtaaagcaacaccacaagcata 186  Q
    ||||  |||| ||||||||||||||||||    
T  14520154 tctaagtgtagagcaacaccacaagcata 14520182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 19588564 - 19588705
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   |||||   |  |||||||||||||||  ||||     
T  19588564 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagcgtctccaagcaacaacaaca--aaaaa 19588661  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| |||||||||||||||||| |||||    
T  19588662 agacctaaatctaagtgtagagcaacaccacaagcataatcaaa 19588705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 28832085 - 28832218
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatcta 155  Q
    ||||||||| |||||| ||  ||||||||||||||||||||| ||||| || ||| ||  ||||||  | ||||||||||||||||  |||| ||| ||     
T  28832085 acaaaatcataccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatggataaagtgtcttcaagcaacaacaaca--aaaacagacct- 28832181  T
Q  156 aatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||||  |||| |||||||||||||||||| |||||    
T  28832182 aatctaagtgtagagcaacaccacaagcataatcaaa 28832218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 34842434 - 34842558
Alignment:
Q  60 aaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatc 159  Q
    |||||||||||||| ||||  |||||||||||| |||| ||||  || |||  |||||||||||| ||||||| |||||||||| ||| | | ||| |||    
T  34842434 aaaatcacaccaat-aaacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaat-aaacaaacctagatc 34842530  T
Q  160 tatttgtaaagcaacaccacaagcatat 187  Q
    ||  ||| ||||||||||||||||||||    
T  34842531 taagtgtgaagcaacaccacaagcatat 34842558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 3880120 - 3880259
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagc-aaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||| |||| ||||| || ||| |   ||||||  | |||| ||||||||     ||||    
T  3880120 aattcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaaaggaagtggtaatcaatagataaagtgtcttcaatcaacaaca-----aaaa 3880214  T
Q  148 tagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     ||| |||||||||  ||||||||||||||||||||||| |||||    
T  3880215 cagacctaaatctaagtgtaaagcaacaccacaagcataatcaaa 3880259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 10281687 - 10281732
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaag 101  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||    
T  10281687 acaaaatcacaccaatgaataacaaagatgtgtggagcaaagaaag 10281732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 28537445 - 28537530
Alignment:
Q  59 caaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||||| |||||| ||  |||||||||| ||||||||| || ||  || ||| ||||||||||||  |||||||||||||||||    
T  28537445 caaaatcataccaatgaattacaaagatgtatggagcaaaaaaggtagtaatcaatgagtaaagtagtctcaagcaacaacaacaa 28537530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 1983577 - 1983433
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaa-caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaata 149  Q
    |||||| |||||||||||| ||| ||| |||||||||||||||||||| |||| ||| ||| ||  |||||| |  ||||||||||||||||| ||| |     
T  1983577 aattcggacaaaatcacacaaatgaaaacaaagatgtgtggagcaaaggaagtaataatcaatggataaagtgggttcaagcaacaacaacaacaaact- 1983479  T
Q  150 gatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    ||  ||||||||  ||||||||| |||||||| |||| ||||||||    
T  1983478 gacttaaatctaagtgtaaagcatcaccacaaacataatcaaaaca 1983433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 25862301 - 25862160
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||||  ||||     
T  25862301 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaaca--aaaac 25862204  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| |||||||||||||||||| |||||    
T  25862203 agacctaaatctaagtgtagagcaacaccacaagcataatcaaa 25862160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 5112059 - 5112194
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaa-caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaata 149  Q
    |||||| | |||||||||||||| ||| |||| |||||||||||||||  |||| || ||| ||||||||  ||  ||||||||||||||||| |||| |    
T  5112059 aattcggataaaatcacaccaatgaaaacaaaaatgtgtggagcaaagggagtggtaatcaatgagtaaacaagtctcaagcaacaacaacaacaaaaca 5112158  T
Q  150 gatctaaatctatttgtaaagcaacaccacaagcat 185  Q
    | | |||| || | ||||||||||||||||| ||||    
T  5112159 gttttaaaactttgtgtaaagcaacaccacaggcat 5112194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 54867007 - 54867143
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatcta 155  Q
    |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||||| |||| |||  ||    
T  54867007 acaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaaaaaaacagacata 54867106  T
Q  156 aatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
     |||||  |||| |||||||||||||||||| |||||    
T  54867107 gatctaagtgtagagcaacaccacaagcataatcaaa 54867143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 16624279 - 16624147
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||| |||||||| ||| || |||||||  |  |||||||||||||||  |||| ||| ||| |    
T  16624279 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtgataatcaatgtgtaaagtgtctccaagcaacaacaaca--aaaacagacctaga 16624182  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    | ||  |||| |||||||||||||| ||| |||||    
T  16624181 tttaagtgtagagcaacaccacaagaataatcaaa 16624147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 5147504 - 5147639
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  |||| |||||||||||||||| ||||| || ||| || |||||||  |  |||| ||||||||||||  || ||| |||||    
T  5147504 aaaatcacaccaatgaataacaatgatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagaaacaacaacaat--aacagacctaaa 5147601  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    ||||  |||| ||||||||||||| |||| ||||||||    
T  5147602 tctaagtgtagagcaacaccacaaacataatcaaaaca 5147639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 5269446 - 5269329
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa-taaaatagatctaaatctatttgtaaagcaac 174  Q
    |||||||||||||||||||||| ||||| || ||| ||  ||||||  |  ||||||||||||||||  |||||| | ||| |||||  |||| ||||||    
T  5269446 aacaaagatgtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaacaaaaatatacctagatctaagtgtagagcaac 5269347  T
Q  175 accacaagcatattcaaa 192  Q
    |||||||||||| |||||    
T  5269346 accacaagcataatcaaa 5269329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 10047197 - 10047338
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||| ||||||||||||||| ||||| || ||| ||  ||||||  |  ||||||| ||||||||  ||||    
T  10047197 aattcggacaaaatcacaccaatgaataacaaaaatgtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaataacaacaa--aaat 10047294  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    |||  || |||||  |||| |||||||||||||||||| |||||    
T  10047295 agacatagatctaagtgtagagcaacaccacaagcataatcaaa 10047338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 38152641 - 38152576
Alignment:
Q  127 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||||||||||||||||||| ||| ||| |||||  |||| |||||||||||||||||| |||||    
T  38152641 caagcaacaacaacaataaaacagacctagatctaagtgtatagcaacaccacaagcataatcaaa 38152576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 16630950 - 16630818
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||| || || || ||| || |||||||  |  |||||| |||||||||  ||| | | ||| |    
T  16630950 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaactggtaatcaatgtgtaaagtgtctccaagcagcaacaacaa--aaacaaacctaga 16630853  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  ||||||||||||||||||||||| |||||    
T  16630852 tctaagtgtaaagcaacaccacaagcataatcaaa 16630818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 37781743 - 37781822
Alignment:
Q  112 tgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||||||||| |||||| |||||||| ||| ||| |||| ||| |||||  ||| |||||||||||||||||||||||||    
T  37781743 tgagtaaagtatcatcaatcaacaacatcaacaaa-tagacctagatctaagtgtgaagcaacaccacaagcatattcaaa 37781822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 5143104 - 5143221
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaaca 175  Q
    ||||| |||||||||||||||| ||||| || ||| || |||||||  |  ||| |||||||||||  |||| ||| |||||||||  |||| | |||||    
T  5143104 aacaatgatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaaacaacaacaaca--aaaacagacctaaatctaagtgtagaacaaca 5143201  T
Q  176 ccacaagcatattcaaaaca 195  Q
    |||||| |||| ||||||||    
T  5143202 ccacaaacataatcaaaaca 5143221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 5396927 - 5396860
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||||||||||||||||| ||||| || ||| || |||||||  |  ||||||||||||||||    
T  5396927 aaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa 5396860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 39245811 - 39245956
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  | ||||||||||||||| ||  ||||| || ||| |   ||||||  |  ||| |||||||||||| ||||     
T  39245811 aattcggacaaaatcacaccaatgaataataaagatgtgtggagcgaatgaagtggtaatcaatagataaagtgtctccaaacaacaacaacaa-aaaac 39245909  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    ||| |||||||||  |||| |||||||||||| ||||| ||||||||    
T  39245910 agacctaaatctaagtgtagagcaacaccacaggcataatcaaaaca 39245956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 24333628 - 24333675
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaa 96  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  24333628 aattcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaa 24333675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 17345782 - 17345704
Alignment:
Q  65 cacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagt-aaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||| ||||||||||||||||||||||| ||||  || ||| ||||| |||||||| |||||||||||||||||    
T  17345782 cacaccaatgaaacaaagatgtgtggagcaaaggaagtagtaatcaatgagtaaaagtagcctcaagcaacaacaacaa 17345704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 775490 - 775631
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| ||  || |   ||||||  |  |||||||||||||||  ||||     
T  775490 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaaccaatagataaagtgtctccaagcaacaacaaca--aaaac 775587  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| |||||||||||||||||| |||||    
T  775588 agacctaaatctaagtgtagagcaacaccacaagcataatcaaa 775631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 32889282 - 32889387
Alignment:
Q  75 aaacaaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaa 173  Q
    |||||||||||||||||||||| |||||||||| ||| || |||||||  |  ||||||| ||||||||   || |||||||||||||  |||| |||||    
T  32889282 aaacaaagatgtgtggagcaaaagaaagtgataatcaatgtgtaaagtgtctccaagcaataacaacaa---aacagatctaaatctaagtgtagagcaa 32889378  T
Q  174 caccacaag 182  Q
    |||||||||    
T  32889379 caccacaag 32889387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 40816985 - 40816870
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaaca 175  Q
    |||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||||||| |||| ||| |||||||||  |||| |||||||    
T  40816985 aacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaaacagacctaaatctaagtgtagagcaaca 40816887  T
Q  176 ccacaagcatattcaaa 192  Q
    |||| |||||| |||||    
T  40816886 ccacgagcataatcaaa 40816870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 9024102 - 9023971
Alignment:
Q  58 acaaaatcacaccaat--caaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatcta 155  Q
    ||||||||||||||||   ||||||||| |||||||||| |||||||| || ||| ||  |||||||||  ||||||| ||||||    ||| | | |||    
T  9024102 acaaaatcacaccaatgaaaaacaaagaagtgtggagcagagaaagtggtaatcaatggataaagtagccccaagcaataacaac----aaacataccta 9024007  T
Q  156 aatctatttgtaaagcaacaccacaagcatattcaa 191  Q
    ||||||  |||| |||||||||||||||||| ||||    
T  9024006 aatctaagtgtatagcaacaccacaagcataatcaa 9023971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 29651637 - 29651770
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| ||| ||||||  |   || |||||||||||| |||| |||  || |    
T  29651637 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgaataaagtgtctataatcaacaacaacaa-aaaacagacttaga 29651735  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  |||| |||||||||||||||||| |||||    
T  29651736 tctaagtgtagagcaacaccacaagcataatcaaa 29651770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 13604902 - 13604830
Alignment:
Q  51 aattcgaacaaaatcacaccaatc-aaacaaagatgtgtggagc-aaagaaagtgatattcagtgagtaaagt 121  Q
    |||||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||| ||| || |||||||    
T  13604902 aattcggacaaaatcacaccaatgtaaacaaagatgtgtggagcaaaaggaagtgataatcaatgtgtaaagt 13604830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 19072823 - 19072889
Alignment:
Q  128 aagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    ||||||||||||||| |||  ||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  19072823 aagcaacaacaacaa-aaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaaca 19072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 19120713 - 19120779
Alignment:
Q  128 aagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    ||||||||||||||| |||  ||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  19120713 aagcaacaacaacaa-aaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaaca 19120779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 21536839 - 21536714
Alignment:
Q  60 aaaatcacaccaatcaaa--caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| |||  |||||||||||||||||||| ||||| || ||| || |||||||  |  ||| |||||||||||  |||||||| ||| |    
T  21536839 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaatcaacaacaaca--aaaatagacctaga 21536742  T
Q  158 tctatttgtaaagcaacaccacaagcata 186  Q
     ||   |||| ||||||||||||||||||    
T  21536741 -cttactgtagagcaacaccacaagcata 21536714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 9476080 - 9476127
Alignment:
Q  51 aattcgaacaaaatcacaccaat--caaacaaagatgtgtggagcaaa 96  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||    
T  9476080 aattcgaacaaaatcacaccaatgaaaaacaaagatgtgtagagcaaa 9476127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 26645166 - 26645083
Alignment:
Q  61 aaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||||||| ||  ||||||||||||||||||||  ||||| || ||| || |||||||  | | |||||||||||||||    
T  26645166 aaatcacaccaatgaataacaaagatgtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctttaagcaacaacaacaa 26645083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 31979331 - 31979472
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||| | ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  | ||||||||||||||||  ||||     
T  31979331 aattcggacaaaatcacaccactaaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaaca--aaaac 31979428  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| ||||||| |||||||||| |||||    
T  31979429 agacctaaatctaagtgtagagcaacatcacaagcataatcaaa 31979472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 27165519 - 27165614
Alignment:
Q  48 gttaattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgag-taaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||||||| ||||  || ||| ||||  |||||||  |||||||||||||||||    
T  27165519 gttaattcgtacaaaattacaccaatataacaaagatgtgtggagcaaaggaagtcgtaatcaatgagcaaaagtagtctcaagcaacaacaacaa 27165614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 22963526 - 22963659
Alignment:
Q  59 caaaatcacaccaat-caaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    ||||||||||||||| ||||| | |||||||||||| ||| ||||| || ||| | | ||||||  |  |||||||||||||||| |||| ||| ||| |    
T  22963526 caaaatcacaccaatacaaactatgatgtgtggagctaaggaagtggtaatcaattaataaagtgtctccaagcaacaacaacaa-aaaacagacctaga 22963624  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  |||| |||||||||||||||||| |||||    
T  22963625 tctaagtgtagagcaacaccacaagcataatcaaa 22963659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 23824867 - 23824734
Alignment:
Q  59 caaaatcacaccaat-caaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    ||||||||||||||| ||||| | |||||||||||| ||| ||||| || ||| | | ||||||  |  |||||||||||||||| |||| ||| ||| |    
T  23824867 caaaatcacaccaatacaaactatgatgtgtggagctaaggaagtggtaatcaattaataaagtgtctccaagcaacaacaacaa-aaaacagacctaga 23824769  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  |||| |||||||||||||||||| |||||    
T  23824768 tctaagtgtagagcaacaccacaagcataatcaaa 23824734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 5572875 - 5572740
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| |   ||||||  |  |||||||||||| ||  ||||     
T  5572875 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacagca--aaaac 5572778  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcata 186  Q
    |||  ||||||||  |||| ||||||||||||||||||    
T  5572777 agacataaatctaagtgtagagcaacaccacaagcata 5572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 21355882 - 21355949
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||||||||||||||||| ||||| || ||| || |||||||  | |||||||||||||||||    
T  21355882 aaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa 21355949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 10077413 - 10077303
Alignment:
Q  80 aagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccac 179  Q
    |||||||||||||||||| ||||| || ||| |   ||||||  |  ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||    
T  10077413 aagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccac 10077316  T
Q  180 aagcatattcaaa 192  Q
    ||||||| |||||    
T  10077315 aagcataatcaaa 10077303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 5017724 - 5017606
Alignment:
Q  76 aacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaac--aacaataaaatagatctaaatctatttgtaaagcaa 173  Q
    |||||||||||||||||||||| ||||| || ||| ||  ||||||  |  |||||||||||  || || |||| ||| ||| |||||  |||| |||||    
T  5017724 aacaaagatgtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaaaaaaaaaaaacagacctagatctaagtgtagagcaa 5017625  T
Q  174 caccacaagcatattcaaa 192  Q
    ||||||||||||| |||||    
T  5017624 caccacaagcataatcaaa 5017606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 31077233 - 31077146
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaaca 138  Q
    ||||| |||||||||||| |||| |||| ||||||||| ||| |||| || |  || ||| ||||||||||||| |||||||| ||||    
T  31077233 aattccaacaaaatcacatcaatgaaacgaagatgtgtagagaaaaggaaatagtaatcaatgagtaaagtagcctcaagcaataaca 31077146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 31086734 - 31086687
Alignment:
Q  58 acaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtg 103  Q
    |||||||||||||||| ||  ||||||||||||||||||||| |||||    
T  31086734 acaaaatcacaccaatgaagaacaaagatgtgtggagcaaaggaagtg 31086687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 31936414 - 31936540
Alignment:
Q  60 aaaatcacaccaatcaaa--caaagatgtgtggagcaaa-gaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaa 156  Q
    |||||||||||||| |||  ||||||||||||||||||| | ||||| || ||| || |||||||  |  ||||||||||||||||   || ||| || |    
T  31936414 aaaatcacaccaatgaaaaacaaagatgtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa---aacagacctta 31936510  T
Q  157 atctatttgtaaagcaacaccacaagcata 186  Q
    ||| |  |||| ||||||||||||||||||    
T  31936511 atcaaagtgtagagcaacaccacaagcata 31936540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 4387186 - 4387102
Alignment:
Q  63 atcacaccaatcaaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaa 147  Q
    |||| |||||| ||||||| ||||||||||||||||||||  || ||| |||||||||||||   ||||||||||||||| ||||    
T  4387186 atcataccaatgaaacaaaaatgtgtggagcaaagaaagtagtaatcaatgagtaaagtagccataagcaacaacaacaaaaaaa 4387102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 27038117 - 27038249
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  || |||||||||||||||||  || || || ||| || |||||||  | |||||||||||||||||  ||| ||||||| |    
T  27038117 aaaatcacaccaatgaataactaagatgtgtggagcaaatgaaatggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa--aaacagatctaga 27038214  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  |||| |||||||||||||||||| |||||    
T  27038215 tctaagtgtagagcaacaccacaagcataatcaaa 27038249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 40593050 - 40592911
Alignment:
Q  56 gaacaaaatcacaccaatcaa-----acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatag 150  Q
    |||||||||||||||||| ||     ||||||||||||||||||||| ||||| || ||| ||  |||| |  |  ||||||||||||||||  ||| ||    
T  40593050 gaacaaaatcacaccaatgaataacaacaaagatgtgtggagcaaaggaagtggtaatcaatggataaaatgtctccaagcaacaacaacaa--aaacag 40592953  T
Q  151 atctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    | |||||||||  |||| |||||||||||||||||| |||||    
T  40592952 acctaaatctaagtgtagagcaacaccacaagcataatcaaa 40592911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 30710051 - 30709919
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||| ||||| || ||| || |||||||  |  |||||||||||||||  |||| ||| ||| |    
T  30710051 aaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaaca--aaaacagacctaga 30709954  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  | || |||||||||| ||||||| |||||    
T  30709953 tctaagtttagagcaacaccataagcataatcaaa 30709919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 48438032 - 48438176
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    |||||| ||||||||||| |||| ||  |||| |||||||||||||||| || || || ||| |   ||||||| |  ||||||||||||||||  |||     
T  48438032 aattcggacaaaatcacatcaatgaataacaaggatgtgtggagcaaaggaaatggtaatcaatagataaagtatctccaagcaacaacaacaa--aaac 48438129  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    ||| ||| |||||  |||| |||||||||||||||||| ||||||||    
T  48438130 agacctagatctaagtgtagagcaacaccacaagcataatcaaaaca 48438176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 18554556 - 18554502
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtg 103  Q
    |||||| |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  18554556 aattcggacaaaatcacaccaatgaataacaaagatgtgtggagcaaagaaagtg 18554502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 4387303 - 4387249
Alignment:
Q  48 gttaattcgaacaaaatcacaccaatcaaacaaagatgtgtggagcaaagaaagt 102  Q
    ||||||||  ||||||||||| |||| ||||||||||||||||||||||| ||||    
T  4387303 gttaattcctacaaaatcacagcaatgaaacaaagatgtgtggagcaaaggaagt 4387249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 36028932 - 36029058
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||  ||||| || ||| || |||||||  |  |||||||||||||||  |||| ||| ||| |    
T  36028932 aaaatcacaccaatgaataacaaagatgtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaaca--aaaacagacctaga 36029029  T
Q  158 tctatttgtaaagcaacaccacaagcata 186  Q
    ||||  | || ||||||||||||||||||    
T  36029030 tctaagtatagagcaacaccacaagcata 36029058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 27026772 - 27026904
Alignment:
Q  60 aaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| ||  ||||||||||||||||||||  || || || ||| || |||||||  |  ||||||||||||| |  |||| ||| ||| |    
T  27026772 aaaatcacaccaatgaataacaaagatgtgtggagcaaatgaaatggtaatcaatgtgtaaagtgtctccaagcaacaacaaga--aaaacagacctaga 27026869  T
Q  158 tctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||||  |||| |||||||||||||||||| |||||    
T  27026870 tctaagtgtagagcaacaccacaagcataatcaaa 27026904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 1417751 - 1417665
Alignment:
Q  58 acaaaatcacaccaatcaaa--caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||||||||||||| |||  |||||||||||||||||||| ||||| || ||| |   ||||||  | |||||||||||||||||    
T  1417751 acaaaatcacaccaatgaaaaacaaagatgtgtggagcaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaacaa 1417665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 3323832 - 3323778
Alignment:
Q  51 aattcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaagaaagtg 103  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||| |||||    
T  3323832 aattcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaaggaagtg 3323778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 8370726 - 8370615
Alignment:
Q  79 aaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacacca 178  Q
    |||||||||||||| |||| ||| | || ||| || |||||||  |  ||||||||||||||||  ||| ||| ||| |||||  |||| ||||||||||    
T  8370726 aaagatgtgtggagtaaaggaagaggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aaacagacctagatctaagtgtagagcaacacca 8370629  T
Q  179 caagcatattcaaa 192  Q
    |||||||| |||||    
T  8370628 caagcataatcaaa 8370615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 35925326 - 35925445
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaac 174  Q
    |||||||||| |||||||||||| | ||| || ||| || ||||| |  |  |||| |||||||||||  ||| ||| ||| |||||  |||| ||||||    
T  35925326 aaacaaagatatgtggagcaaagcaggtggtaatcaatgtgtaaaatgtctccaagtaacaacaacaa--aaacagacctagatctaagtgtagagcaac 35925423  T
Q  175 accacaagcatattcaaaacac 196  Q
    |||||||||||| |||||||||    
T  35925424 accacaagcataatcaaaacac 35925445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 3328547 - 3328481
Alignment:
Q  127 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 195  Q
    |||| |||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  3328547 caagaaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaaaca 3328481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 29760 - 29620
Alignment:
Q  60 aaaatcacaccaatcaaa--caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataa------aataga 151  Q
    |||||||||||||| |||  |||| ||||||| ||||||| ||||| || ||| ||||||||||| | |||| |||||||||||| ||      || ||     
T  29760 aaaatcacaccaatgaaaaacaaaaatgtgtgaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaacaacaaaacagt 29661  T
Q  152 tctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    || ||| |||| ||||||||||||||||||||||| |||||    
T  29660 tcaaaaactatgtgtaaagcaacaccacaagcataatcaaa 29620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 43084 - 43224
Alignment:
Q  60 aaaatcacaccaatcaaa--caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatca------agcaacaacaacaataaaataga 151  Q
    |||||||||||||| |||  |||| ||||||| ||||||| ||||| || ||| ||||||||||| | |||      | |||||||||||| |||| ||     
T  43084 aaaatcacaccaatgaaaaacaaaaatgtgtgaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaacaacaaaacagt 43183  T
Q  152 tctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    || ||| |||| ||||||||||||||||||||||| |||||    
T  43184 tcaaaaactatgtgtaaagcaacaccacaagcataatcaaa 43224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 23357 - 23483
Alignment:
Q  60 aaaatcacaccaatcaaac--aaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| |||   |||||||||| |||||||| ||||| || ||| |||||||| || | |||||||| ||||||||   || || | ||||    
T  23357 aaaatcacaccaataaaaagtaaagatgtgttgagcaaaggaagtggtaatcaatgagtaaaatatcctcaagcaataacaacaa---aacagttataaa 23453  T
Q  158 tctatttgtaaagcaacaccacaagcatat 187  Q
     |||  ||||||||||||||||||||||||    
T  23454 actaagtgtaaagcaacaccacaagcatat 23483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 10546 - 10688
Alignment:
Q  52 attcgaacaaaatcacaccaatcaa--acaaagatgtgtggagcaaaga-aagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaat 148  Q
    ||||| |||||||||||||||| ||  |||||||||||||||||||| | ||||| || ||  |   ||||||  |  |||||||||||||||| ||||     
T  10546 attcgtacaaaatcacaccaatgaataacaaagatgtgtggagcaaaaagaagtggtaatcgatagataaagttactccaagcaacaacaacaa-aaaac 10644  T
Q  149 agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 192  Q
    ||| |||||||||  |||| |||||||||||||||||| |||||    
T  10645 agacctaaatctaagtgtagagcaacaccacaagcataatcaaa 10688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 44212 - 44105
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaac 174  Q
    ||||||||||||||||||||||| ||||| || ||| || |||||||  |  |||||||||||||||  |||| ||| || ||||||  |||| ||||||    
T  44212 aaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaaca--aaaacagacct-aatcta-gtgtagagcaac 44117  T
Q  175 accacaagcata 186  Q
    ||||||||||||    
T  44116 accacaagcata 44105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 37085 - 37018
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||||||||||||||||| ||||| || ||| || |||||||  |  ||||||||||||||||    
T  37085 aaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa 37018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 133559 - 133487
Alignment:
Q  51 aattcgaacaaaatcacaccaatc-aaacaaagatgtgtggagc-aaagaaagtgatattcagtgagtaaagt 121  Q
    |||||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||| ||| || |||||||    
T  133559 aattcggacaaaatcacaccaatgtaaacaaagatgtgtggagcaaaaggaagtgataatcaatgtgtaaagt 133487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 1252 - 1319
Alignment:
Q  75 aaacaaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    ||||||||||||||||||||||| ||||| || ||| || |||||||  |  ||||||||||||||||    
T  1252 aaacaaagatgtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 85512 - 85637
Alignment:
Q  60 aaaatcacaccaatcaaa--caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaa 157  Q
    |||||||||||||| |||  ||||||||||| |||||||| ||||| || ||| || |||||||  |  ||||   |||||||||||||| ||| ||| |    
T  85512 aaaatcacaccaatgaaaaacaaagatgtgtagagcaaaggaagtggtaatcaatgtgtaaagtgtctccaag---caacaacaataaaacagacctaga 85608  T
Q  158 tctatttgtaaagcaacaccacaagcata 186  Q
    ||||  |||| ||||||| ||||||||||    
T  85609 tctaagtgtagagcaacatcacaagcata 85637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 45085 - 45166
Alignment:
Q  62 aatcacaccaatcaaa-caaagatgtgtggagcaaagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaa 142  Q
    |||||||||||| ||| |||||||||||||||||||  ||||| || ||| || |||||||  |  ||||||||||||||||    
T  45085 aatcacaccaattaaaacaaagatgtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa 45166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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