View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7572_high_2 (Length: 456)
Name: NF7572_high_2
Description: NF7572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7572_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 250 - 444
Target Start/End: Original strand, 654988 - 655182
Alignment:
| Q |
250 |
acaatatcattactaacatatggataatttgaaattttacctgcaatagttttgagcttctctaatgaatcaggcaaccttattaactttccagcttcaa |
349 |
Q |
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| T |
654988 |
acaatatcattactaacatatggataatttgaaattttacctgcaatagttttgagcttctctaatgaatcaggcaaccttattaactttccagcttcaa |
655087 |
T |
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| Q |
350 |
tgaaacctctttctcttctcactacagggtgacctctatatatgcttactcttggacactctagtccattacatcttccccaaatctgctgatgt |
444 |
Q |
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| T |
655088 |
tgaaacctctttctcttctcactacagggtgacctctatatatgcttactcttggacactctagtccattatatcttccccaaatctgcttatgt |
655182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 654805 - 654993
Alignment:
| Q |
18 |
aatagcctcttcaacaaaaaacagtttgtcattatctctgatcacatcaatacaatctatttctgctccttcttcatttgtcaccattgtatcttttgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
654805 |
aatagcctcttcaacaaaaaacagtttgtcattatctctgataacatcaatacaatctatttctgctccttcttcatttgtcaccattgtatcttttgca |
654904 |
T |
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| Q |
118 |
tcaaacccaaatttttcacctattgtacacagataaaatcataaatcaggatactaagacttgcattta-tttctcaatatacacaata |
205 |
Q |
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| T |
654905 |
tcaaacccaaatttttcacctattgtacacaaataaaatcataaatcaggatactaagactttcatttattttctcaatgtacacaata |
654993 |
T |
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